Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   K4A81_RS14445 Genome accession   NZ_CP082262
Coordinates   2895430..2896182 (-) Length   250 a.a.
NCBI ID   WP_017418284.1    Uniprot ID   A0AAP5QSZ3
Organism   Bacillus velezensis strain BIM B-454D     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2890430..2901182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4A81_RS14415 (K4A81_14415) - 2890783..2891217 (+) 435 WP_017418279.1 helix-turn-helix domain-containing protein -
  K4A81_RS14420 (K4A81_14420) - 2891231..2891677 (+) 447 WP_063174697.1 ImmA/IrrE family metallo-endopeptidase -
  K4A81_RS14425 (K4A81_14425) - 2891716..2893140 (+) 1425 WP_222885024.1 recombinase family protein -
  K4A81_RS14430 (K4A81_14430) radC 2893153..2893560 (-) 408 Protein_2826 DNA repair protein RadC -
  K4A81_RS14435 (K4A81_14435) - 2893592..2894161 (-) 570 WP_065180393.1 nucleoside triphosphate pyrophosphatase -
  K4A81_RS14440 (K4A81_14440) - 2894302..2895303 (-) 1002 WP_065180394.1 SPOR domain-containing protein -
  K4A81_RS14445 (K4A81_14445) comC 2895430..2896182 (-) 753 WP_017418284.1 A24 family peptidase Machinery gene
  K4A81_RS14450 (K4A81_14450) - 2896323..2897615 (-) 1293 WP_065180395.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  K4A81_RS14455 (K4A81_14455) - 2897674..2900316 (-) 2643 WP_022552877.1 valine--tRNA ligase -
  K4A81_RS14460 (K4A81_14460) - 2900769..2900960 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27260.00 Da        Isoelectric Point: 9.4293

>NTDB_id=600574 K4A81_RS14445 WP_017418284.1 2895430..2896182(-) (comC) [Bacillus velezensis strain BIM B-454D]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=600574 K4A81_RS14445 WP_017418284.1 2895430..2896182(-) (comC) [Bacillus velezensis strain BIM B-454D]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAACTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.065

99.2

0.576