Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   BAJP3042_RS19850 Genome accession   NZ_CP082243
Coordinates   392443..392607 (+) Length   54 a.a.
NCBI ID   WP_269461319.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 387443..397607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS20050 - 389908..390198 (+) 291 WP_363316254.1 hypothetical protein -
  BAJP3042_RS19845 - 390276..392378 (+) 2103 Protein_326 amino acid adenylation domain-containing protein -
  BAJP3042_RS19850 comS 392443..392607 (+) 165 WP_269461319.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6184.17 Da        Isoelectric Point: 12.0559

>NTDB_id=600488 BAJP3042_RS19850 WP_269461319.1 392443..392607(+) (comS) [Bacillus amyloliquefaciens strain JP3042]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRQARATTSLLYFCWKGQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=600488 BAJP3042_RS19850 WP_269461319.1 392443..392607(+) (comS) [Bacillus amyloliquefaciens strain JP3042]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCAAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAAGGGTC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

63.636

81.481

0.519