Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   BAJP3042_RS13250 Genome accession   NZ_CP082243
Coordinates   2737923..2738675 (-) Length   250 a.a.
NCBI ID   WP_222835222.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2732923..2743675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS13225 (BAJP3042_13225) mreC 2733359..2734222 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  BAJP3042_RS13230 (BAJP3042_13230) mreB 2734253..2735266 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  BAJP3042_RS13235 (BAJP3042_13235) radC 2735358..2736053 (-) 696 WP_007408165.1 DNA repair protein RadC -
  BAJP3042_RS13240 (BAJP3042_13240) - 2736085..2736654 (-) 570 WP_007408164.1 nucleoside triphosphate pyrophosphatase -
  BAJP3042_RS13245 (BAJP3042_13245) - 2736795..2737796 (-) 1002 WP_138092704.1 SPOR domain-containing protein -
  BAJP3042_RS13250 (BAJP3042_13250) comC 2737923..2738675 (-) 753 WP_222835222.1 A24 family peptidase Machinery gene
  BAJP3042_RS13255 (BAJP3042_13255) - 2738815..2740107 (-) 1293 WP_222835223.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  BAJP3042_RS13260 (BAJP3042_13260) - 2740166..2742808 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  BAJP3042_RS13265 (BAJP3042_13265) - 2743261..2743452 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27163.83 Da        Isoelectric Point: 9.4293

>NTDB_id=600465 BAJP3042_RS13250 WP_222835222.1 2737923..2738675(-) (comC) [Bacillus amyloliquefaciens strain JP3042]
MLLILFFLGLIFGSFFYTAACRIPLRISVVSPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRGKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFASKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=600465 BAJP3042_RS13250 WP_222835222.1 2737923..2738675(-) (comC) [Bacillus amyloliquefaciens strain JP3042]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTGTTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGGAAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGTTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGCCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGTCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58