Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDQ70_RS00270 Genome accession   NZ_CP098534
Coordinates   52454..55597 (-) Length   1047 a.a.
NCBI ID   WP_263589028.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10525     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47454..60597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ70_RS00245 (NDQ70_00245) - 47827..48390 (-) 564 WP_002214615.1 ComF family protein -
  NDQ70_RS00250 (NDQ70_00250) - 49571..49960 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  NDQ70_RS00260 (NDQ70_00260) - 50123..50502 (-) 380 Protein_49 VOC family protein -
  NDQ70_RS00265 (NDQ70_00265) carA 50556..51689 (-) 1134 WP_025456026.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  NDQ70_RS00270 (NDQ70_00270) pilC 52454..55597 (-) 3144 WP_263589028.1 PilC family type IV pilus tip adhesin Machinery gene
  NDQ70_RS00275 (NDQ70_00275) apbC 57599..58678 (-) 1080 WP_003699443.1 iron-sulfur cluster carrier protein ApbC -
  NDQ70_RS00285 (NDQ70_00285) - 59052..59561 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  NDQ70_RS00290 (NDQ70_00290) nadR 59902..60342 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -

Sequence

Protein


Download         Length: 1047 a.a.        Molecular weight: 115572.65 Da        Isoelectric Point: 10.0351

>NTDB_id=600449 NDQ70_RS00270 WP_263589028.1 52454..55597(-) (pilC) [Neisseria gonorrhoeae strain 10525]
MNKTLKRRVFRHTALYAAILMFSHTGGGGGAMAQTRQYAIVMNKRNQPEVKWDGQYQKSQLREKDGERKFIYTNQRNKLG
QQNNFISFDNTDTLVSRQSGTAVFGTATYLPPYGKVSGFDTDRLKKRNNAVDWIRTTRAGLSGYSYTGVTCRSSKCPQLV
YKTRFSFDNTGLAKNAGRLNRHPDPSRENSPIYKLEDHPWLGVSFNLGAEGTDKDGRSSNKLVSSFDENNSNSNQNLVYT
TEGHRISLGDWQRETTAMAYYLNAKLHLLDKKGIKDIAPGKTVRLGTLRPRVETTGRSWLDFWATWKIEDKGNIAVRLDL
PEVKAGRCTNTAHPNKTAQALSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTKTDPGRPGRHSLAAL
NTRDIKSREPNFNSRQTVIRLPGGVYKISSGKNGGRVAGFNGNDGKNDTFGIYKDRLVTPEADEWSNILLPWTARYYGND
DIFKTFNQPNNKTQNGKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDQRGYELKL
SYIPGTMERKDIEGNDSDLAKELRAFAEKGYVGDRYGVDGGFVLRRITDDQDRQKHFFMFGAMGLGGRGAYALDLSKIDS
SNLTGVSMFDVQNDKNNNNNKNDNNRVELGYTVGTPQIGKTRSGKYAAFLASGYAAKDIGSGDNKTALYVYDLNNTLGTP
IAKIEVKDGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSNSDPNKWSVRTIFEGTKPITSAPAVSRLKDKRVVI
FGTGSDLTEDDVLNTDEQYIYGIFDDDKAANNVNASRGVLGSGLLEQHLTQENKTLFLNKRSDGSGSKGWAVKLTGGRRV
TVKPTVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDNQVAQYSGHQKMNGKSVPIGCMWKNGKT
VCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRL
SWREVFF

Nucleotide


Download         Length: 3144 bp        

>NTDB_id=600449 NDQ70_RS00270 WP_263589028.1 52454..55597(-) (pilC) [Neisseria gonorrhoeae strain 10525]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCACTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGCGATGGCGCAAACCCGTCAATACGCTATTGTCATGAACAAACGAAATCAGCCGGAGGTAAAGTGGGATG
GGCAATATCAAAAATCACAATTAAGGGAAAAAGACGGGGAACGCAAATTTATCTATACGAACCAGAGAAACAAGTTGGGC
CAACAAAACAATTTTATCTCATTCGACAATACCGATACCCTTGTTTCCCGACAAAGCGGTACTGCCGTTTTTGGCACAGC
CACCTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGATAGGCTGAAAAAGCGCAACAATGCCGTTGATTGGA
TTCGTACCACCCGGGCCGGGCTGTCAGGCTACTCCTACACCGGCGTCACATGCAGAAGCAGCAAATGCCCCCAACTTGTC
TATAAAACCCGATTTTCCTTCGACAACACCGGTTTGGCAAAAAATGCGGGCAGGCTGAATAGGCACCCGGACCCAAGCCG
CGAAAATTCGCCCATTTACAAATTGGAAGATCATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGCCGAGGGTACCGACA
AAGATGGCAGATCATCCAACAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACG
ACAGAAGGCCACCGTATTTCCCTTGGCGACTGGCAGCGCGAAACGACCGCCATGGCCTATTATCTGAACGCCAAGCTGCA
CCTGCTGGACAAAAAAGGGATTAAAGATATCGCGCCAGGCAAAACAGTGCGGTTGGGTACCTTGAGACCGCGCGTCGAGA
CGACAGGACGAAGCTGGCTAGATTTTTGGGCTACGTGGAAGATTGAAGATAAAGGGAACATTGCAGTCCGCCTCGACCTG
CCGGAAGTCAAAGCAGGCCGCTGCACCAACACCGCCCACCCCAATAAAACAGCCCAAGCCCTTTCGCCGGCACTGACCGC
CCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACCCCGGCAGCT
CGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTAAAACCGACCCCGGCAGGCCCGGCCGGCATTCCCTCGCCGCTTTG
AATACGCGGGATATCAAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCCGGGCGGCGTGTACAA
GATCAGCTCGGGCAAGAACGGCGGCCGGGTCGCGGGTTTTAATGGCAATGACGGCAAAAACGACACTTTCGGCATCTACA
AGGACAGGCTCGTCACACCTGAGGCCGACGAGTGGAGCAACATACTGCTGCCTTGGACGGCCCGGTATTACGGTAATGAC
GATATATTTAAAACATTCAACCAACCAAACAACAAAACACAAAACGGCAAAAAACAATACAGCCAAAAATACCGCATCCG
CACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCGGCGGGTATC
TGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACAGACCAACGAGGCTACGAACTGAAGCTC
AGCTACATCCCCGGCACGATGGAGCGTAAGGATATTGAAGGCAATGACTCCGACCTTGCCAAAGAGCTGCGCGCCTTTGC
CGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACCAGGACAGGC
AAAAACATTTCTTTATGTTTGGTGCGATGGGCCTGGGCGGCAGAGGCGCGTATGCCTTGGATTTAAGCAAAATCGACAGC
AGCAACCTGACCGGCGTTTCCATGTTTGATGTCCAAAACGACAAAAATAACAATAACAATAAGAATGACAATAATCGCGT
GGAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCGCAGCGGCAAATACGCCGCCTTCCTCGCTTCCGGTT
ATGCGGCTAAAGATATTGGCAGCGGCGATAATAAAACCGCGCTGTATGTATATGATTTGAACAACACCTTAGGTACGCCG
ATTGCAAAAATCGAAGTGAAGGACGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGT
CGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCAATTCCGATCCTAATAAATGGTCTG
TAAGGACTATTTTCGAAGGCACAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGAAAGACAAACGCGTCGTCATC
TTCGGTACGGGCAGCGATTTGACCGAAGATGATGTACTGAATACGGACGAACAATATATTTACGGCATCTTCGACGACGA
TAAGGCGGCGAATAATGTAAATGCAAGCCGCGGCGTTTTGGGGAGCGGGCTGCTCGAGCAACACCTTACTCAGGAAAATA
AAACATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGGGCTGGGCGGTGAAATTGACAGGCGGACGGCGCGTT
ACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATCCGCAGCTATACGGGTAATGACAAATGTGGCGCGCA
AACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATAACC
AGGTTGCGCAATATTCCGGCCATCAGAAAATGAACGGCAAGTCCGTCCCCATAGGCTGCATGTGGAAAAACGGCAAAACC
GTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGATTTCCCCGT
CACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCG
GAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTA
AGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterProScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(519-859)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

72.805

100

0.736