Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BAJP3042_RS10790 Genome accession   NZ_CP082243
Coordinates   2240035..2240643 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus amyloliquefaciens strain JP3042     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2235035..2245643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAJP3042_RS10750 (BAJP3042_10750) - 2236085..2236591 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  BAJP3042_RS10755 (BAJP3042_10755) - 2236730..2237143 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  BAJP3042_RS10760 (BAJP3042_10760) - 2237173..2237610 (-) 438 WP_127069512.1 YppG family protein -
  BAJP3042_RS10765 (BAJP3042_10765) - 2237797..2237979 (+) 183 WP_003153532.1 YppF family protein -
  BAJP3042_RS10770 (BAJP3042_10770) - 2238018..2238386 (-) 369 WP_042635291.1 YppE family protein -
  BAJP3042_RS10775 (BAJP3042_10775) - 2238432..2238677 (-) 246 WP_014418233.1 DUF5446 family protein -
  BAJP3042_RS10780 (BAJP3042_10780) sspM 2238883..2238987 (+) 105 WP_222835106.1 acid-soluble spore protein SspM -
  BAJP3042_RS10785 (BAJP3042_10785) - 2239031..2239993 (-) 963 WP_014305287.1 DUF2515 domain-containing protein -
  BAJP3042_RS10790 (BAJP3042_10790) recU 2240035..2240643 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  BAJP3042_RS10795 (BAJP3042_10795) - 2240682..2243465 (+) 2784 WP_222835107.1 PBP1A family penicillin-binding protein -
  BAJP3042_RS10800 (BAJP3042_10800) - 2243543..2244034 (-) 492 WP_127069514.1 YpoC family protein -
  BAJP3042_RS10805 (BAJP3042_10805) nth 2244031..2244690 (-) 660 WP_063094937.1 endonuclease III -
  BAJP3042_RS10810 (BAJP3042_10810) dnaD 2244709..2245407 (-) 699 WP_060674319.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=600448 BAJP3042_RS10790 WP_012117837.1 2240035..2240643(+) (recU) [Bacillus amyloliquefaciens strain JP3042]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=600448 BAJP3042_RS10790 WP_012117837.1 2240035..2240643(+) (recU) [Bacillus amyloliquefaciens strain JP3042]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAAATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891