Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDQ66_RS00270 Genome accession   NZ_CP098532
Coordinates   52454..55600 (-) Length   1048 a.a.
NCBI ID   WP_260247665.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10537     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47454..60600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ66_RS00245 (NDQ66_00245) - 47827..48390 (-) 564 WP_002214615.1 ComF family protein -
  NDQ66_RS12060 - 48950..49323 (+) 374 Protein_48 hypothetical protein -
  NDQ66_RS00250 (NDQ66_00250) - 49571..49960 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  NDQ66_RS00260 (NDQ66_00260) - 50123..50502 (-) 380 Protein_50 VOC family protein -
  NDQ66_RS00265 (NDQ66_00265) carA 50556..51689 (-) 1134 WP_025456026.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  NDQ66_RS00270 (NDQ66_00270) pilC 52454..55600 (-) 3147 WP_260247665.1 PilC family type IV pilus tip adhesin Machinery gene
  NDQ66_RS00275 (NDQ66_00275) apbC 57602..58681 (-) 1080 WP_003699443.1 iron-sulfur cluster carrier protein ApbC -
  NDQ66_RS00285 (NDQ66_00285) - 59055..59564 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  NDQ66_RS00290 (NDQ66_00290) nadR 59905..60345 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -

Sequence

Protein


Download         Length: 1048 a.a.        Molecular weight: 115716.00 Da        Isoelectric Point: 9.9687

>NTDB_id=600377 NDQ66_RS00270 WP_260247665.1 52454..55600(-) (pilC) [Neisseria gonorrhoeae strain 10537]
MNKTLKRRVFRHTALYAAILMFSHTGGGGGAMAQTRQYAIVMNKRNQPEVKWDGQYQKSQLREKDGERKFIYTNQRNKLG
QQNNFISFDNTDTLVSRQSGTAVFGTATYLPPYGKVSGFDTDRLKKRNNAVDWIRTTRIALAGYSYEGVVCRSGTGCPKL
VYKTRFSFDNPDLVKNAGKLDRYTDLSRENSPIYKLKDYPWLGVSFNLGAEGTDKDGRSPNKLVSSFDENNSNSNQNLVY
TTEGHPISLGDWQRETTAMAYYLNAKLHLLDKKGIKDIAPGKTVRLGTLRPRVETTGRSWLDFWATWKIEDKGNIAVRLD
LPEVKAGRCTNTAHPNKTAQALSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTKTDPGRPGRHSLAA
LNTRDIKSREPNFNSRQTVIRLPGGVYKISSGKNGGRVAGFNGNDGKNDTFGIYKDRLVTPEADEWSNILLPWTARYYGN
DDIFKTFNQPNNKTQNGKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDQRGYELK
LSYIPGTMERKDIEGNDSDLAKELRAFAEKGYVGDRYGVDGGFVLRRITDDQDRQKHFFMFGAMGLGGRGAYALDLSKID
SSNLTGVSMFDVQNDKNNNNNKNDNNRVELGYTVGTPQIGKTRSGKYAAFLASGYAAKDIGSGDNKTALYVYDLNNTLGT
PIAKIEVKDGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSNSDPNKWSVRTIFEGTKPITSAPAVSRLKDKRVV
IFGTGSDLTEDDVLNTDEQYIYGIFDDDKAANNVNASRGVLGSGLLEQHLTQENKTLFLNKRSDGSGSKGWAVKLTGGRR
VTVKPTVVLRTAFVTIRSYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDNQVAQYSGHQKMNGKSVPIGCMWKNGK
TVCPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKR
LSWREVFF

Nucleotide


Download         Length: 3147 bp        

>NTDB_id=600377 NDQ66_RS00270 WP_260247665.1 52454..55600(-) (pilC) [Neisseria gonorrhoeae strain 10537]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCACTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGGCGATGGCGCAAACCCGTCAATACGCTATTGTCATGAACAAACGAAATCAGCCGGAGGTAAAGTGGGATG
GGCAATATCAAAAATCACAATTAAGGGAAAAAGACGGGGAACGCAAATTTATCTATACGAACCAGAGAAACAAGTTGGGC
CAACAAAACAATTTTATCTCATTCGACAATACCGATACCCTTGTTTCCCGACAAAGCGGTACTGCCGTTTTTGGCACAGC
CACCTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGATAGGCTGAAAAAGCGCAACAATGCCGTTGATTGGA
TTCGTACCACCCGCATCGCGCTGGCAGGCTACAGCTACGAAGGTGTCGTATGCAGAAGCGGCACAGGCTGTCCCAAACTT
GTCTATAAAACCCGATTTTCCTTCGATAATCCCGACTTGGTAAAAAATGCGGGCAAGCTGGATAGGTACACAGACCTAAG
CCGCGAAAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTGTCTTTCAATTTGGGCGCCGAGGGTACCG
ACAAAGATGGCAGATCACCCAACAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTAT
ACGACAGAAGGCCACCCTATTTCCCTTGGCGACTGGCAGCGCGAAACGACCGCCATGGCCTATTATCTGAACGCCAAGCT
GCACCTGCTGGACAAAAAAGGGATTAAAGATATCGCGCCAGGCAAAACAGTGCGGTTGGGTACCTTGAGACCGCGCGTCG
AGACGACAGGACGAAGCTGGCTAGATTTTTGGGCTACGTGGAAGATTGAAGATAAAGGGAACATTGCAGTCCGCCTCGAC
CTGCCGGAAGTCAAAGCAGGCCGCTGCACCAACACCGCCCACCCCAATAAAACAGCCCAAGCCCTTTCGCCGGCACTGAC
CGCCCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCCACCTACCCCGGCA
GCTCGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTAAAACCGACCCCGGCAGGCCCGGCCGGCATTCCCTCGCCGCT
TTGAATACGCGGGATATCAAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCCGGGCGGCGTGTA
CAAGATCAGCTCGGGCAAGAACGGCGGCCGGGTCGCGGGTTTTAATGGCAATGACGGCAAAAACGACACTTTCGGCATCT
ACAAGGACAGGCTCGTCACACCTGAGGCCGACGAGTGGAGCAACATACTGCTGCCTTGGACGGCCCGGTATTACGGTAAT
GACGATATATTTAAAACATTCAACCAACCAAACAACAAAACACAAAACGGCAAAAAACAATACAGCCAAAAATACCGCAT
CCGCACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCGGCGGGT
ATCTGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACAGACCAACGAGGCTACGAACTGAAG
CTCAGCTACATCCCCGGCACGATGGAGCGTAAGGATATTGAAGGCAATGACTCCGACCTTGCCAAAGAGCTGCGCGCCTT
TGCCGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACCAGGACA
GGCAAAAACATTTCTTTATGTTTGGTGCGATGGGCCTGGGCGGCAGAGGCGCGTATGCCTTGGATTTAAGCAAAATCGAC
AGCAGCAACCTGACCGGCGTTTCCATGTTTGATGTCCAAAACGACAAAAATAACAATAACAATAAGAATGACAATAATCG
CGTGGAATTAGGCTACACCGTCGGTACGCCGCAAATCGGCAAAACCCGCAGCGGCAAATACGCCGCCTTCCTCGCTTCCG
GTTATGCGGCTAAAGATATTGGCAGCGGCGATAATAAAACCGCGCTGTATGTATATGATTTGAACAACACCTTAGGTACG
CCGATTGCAAAAATCGAAGTGAAGGACGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCAC
GGTCGATATCGCCTATGCCGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCAATTCCGATCCTAATAAATGGT
CTGTAAGGACTATTTTCGAAGGCACAAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGAAAGACAAACGCGTCGTC
ATCTTCGGTACGGGCAGCGATTTGACCGAAGATGATGTACTGAATACGGACGAACAATATATTTACGGCATCTTCGACGA
CGATAAGGCGGCGAATAATGTAAATGCAAGCCGCGGCGTTTTGGGGAGCGGGCTGCTCGAGCAACACCTTACTCAGGAAA
ATAAAACATTATTCCTGAACAAGAGATCCGACGGTTCGGGCAGCAAGGGCTGGGCGGTGAAATTGACAGGCGGACGGCGC
GTTACCGTCAAACCGACCGTGGTATTGCGTACCGCCTTCGTAACCATCCGCAGCTATACGGGTAATGACAAATGTGGCGC
GCAAACCGCCATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATA
ACCAGGTTGCGCAATATTCCGGCCATCAGAAAATGAACGGCAAGTCCGTCCCCATAGGCTGCATGTGGAAAAACGGCAAA
ACCGTCTGCCCGAACGGATATGTTTACGACAAACCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGATTTCCC
CGTCACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCT
CCGGAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGC
TTAAGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterProScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(520-860)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

72.075

100

0.729