Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NDN18_RS05180 Genome accession   NZ_CP098521
Coordinates   1092717..1093658 (+) Length   313 a.a.
NCBI ID   WP_001210792.1    Uniprot ID   A0A077GHT6
Organism   Acinetobacter baumannii strain Cl107     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1087717..1098658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS05170 (NDN18_05165) basA 1088142..1089989 (+) 1848 WP_000910265.1 acinetobactin non-ribosomal peptide synthetase subunit BasA -
  NDN18_RS05175 (NDN18_05170) basB 1090060..1092087 (-) 2028 WP_000939837.1 acinetobactin non-ribosomal peptide synthetase subunit BasB -
  NDN18_RS05180 (NDN18_05175) ceuB 1092717..1093658 (+) 942 WP_001210792.1 ferric acinetobactin ABC transporter permease subunit BauD Machinery gene
  NDN18_RS05185 (NDN18_05180) bauC 1093658..1094605 (+) 948 WP_001223269.1 ferric acinetobactin ABC transporter permease subunit BauC -
  NDN18_RS05190 (NDN18_05185) bauE 1094602..1095372 (+) 771 WP_000582117.1 ferric acinetobactin ABC transporter ATP-binding protein BauE -
  NDN18_RS05195 (NDN18_05190) bauB 1095379..1096347 (+) 969 WP_001104136.1 siderophore-binding periplasmic lipoprotein BauB -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 33993.06 Da        Isoelectric Point: 8.6941

>NTDB_id=600325 NDN18_RS05180 WP_001210792.1 1092717..1093658(+) (ceuB) [Acinetobacter baumannii strain Cl107]
MRFGLFCIFIILCICSLLLGAEQIQWSTLFSFSHESWLTLTASRIPRLITIVLTGIGLAVCGVILQHIVRNKFVEPETSG
GLDAAKLGILVSLTLVPVTSTLSKMIFAIIFCFIASLIYIAIIRRIRFRNTVLVPVIGLMYGSVLSALAEFYAYRFNILQ
SMQGWLLGDFSKIVQGHYEVIYIIFPIVVLTYLFAHRFTVIGMGEEMASSLGLSYAAIAAIGLILVAITVSTTVITVGAI
PFVGLVVPNLVALKYGENLAKTLPIVALGGASLLLVCDILGRSIIYPFEVPIGLTAGGVGGIIFLILILREFR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=600325 NDN18_RS05180 WP_001210792.1 1092717..1093658(+) (ceuB) [Acinetobacter baumannii strain Cl107]
ATGCGATTTGGCTTATTCTGTATTTTTATCATTTTATGTATTTGTTCGTTATTGCTGGGGGCTGAGCAAATCCAGTGGTC
TACCTTATTTTCTTTTTCTCATGAGAGTTGGCTCACTCTTACAGCCAGCCGTATTCCTCGTTTAATTACTATTGTGCTTA
CCGGTATCGGGTTGGCGGTATGTGGCGTCATCTTGCAGCACATTGTGCGTAACAAGTTTGTTGAACCGGAAACTTCGGGT
GGTTTAGATGCTGCCAAACTGGGAATTTTAGTGTCGTTAACTTTAGTTCCGGTAACCAGCACGCTGAGCAAGATGATATT
TGCGATCATTTTTTGTTTTATTGCTAGCTTAATTTATATCGCAATTATTCGGCGGATCCGTTTTAGAAATACGGTTTTAG
TACCAGTTATTGGCTTGATGTACGGCAGTGTACTGAGTGCCTTAGCTGAGTTTTATGCCTATCGCTTTAATATTTTACAA
AGTATGCAAGGGTGGCTTTTAGGAGATTTTTCAAAAATTGTCCAAGGCCACTATGAAGTTATTTACATTATTTTTCCGAT
TGTTGTCCTGACTTATCTTTTTGCACACCGCTTTACTGTGATTGGTATGGGGGAAGAGATGGCTTCTAGCTTAGGACTCA
GTTATGCGGCTATAGCCGCCATTGGTTTGATACTGGTTGCCATTACAGTTTCAACCACAGTAATTACGGTTGGTGCTATT
CCTTTTGTCGGGCTCGTGGTCCCCAATTTAGTCGCACTGAAATACGGAGAGAACTTAGCTAAAACCTTGCCCATTGTGGC
TTTAGGTGGGGCGTCTCTATTACTGGTTTGCGACATTCTTGGTCGCTCGATTATTTATCCATTTGAAGTGCCAATTGGAC
TTACCGCAGGTGGTGTGGGGGGAATTATTTTCCTCATCCTCATTTTGAGGGAGTTCAGATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077GHT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.595

94.569

0.422