Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NDN18_RS03225 Genome accession   NZ_CP098521
Coordinates   657537..657899 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain Cl107     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 652537..662899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS03210 (NDN18_03210) - 655031..656149 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  NDN18_RS03215 (NDN18_03215) - 656209..656847 (-) 639 WP_002027721.1 hypothetical protein -
  NDN18_RS03220 (NDN18_03220) pilG 657130..657513 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  NDN18_RS03225 (NDN18_03225) pilH 657537..657899 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  NDN18_RS03230 (NDN18_03230) - 657960..658496 (+) 537 WP_000729762.1 chemotaxis protein CheW -
  NDN18_RS03235 (NDN18_03235) - 658543..660621 (+) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=600318 NDN18_RS03225 WP_000101096.1 657537..657899(+) (pilH) [Acinetobacter baumannii strain Cl107]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=600318 NDN18_RS03225 WP_000101096.1 657537..657899(+) (pilH) [Acinetobacter baumannii strain Cl107]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392