Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   K4200_RS03965 Genome accession   NZ_CP082231
Coordinates   798932..800605 (+) Length   557 a.a.
NCBI ID   WP_010822634.1    Uniprot ID   -
Organism   Enterococcus faecalis strain E006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 793932..805605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4200_RS03935 (K4200_03935) - 794595..794825 (+) 231 WP_002355878.1 exodeoxyribonuclease VII small subunit -
  K4200_RS03940 (K4200_03940) - 794825..795706 (+) 882 WP_002355879.1 polyprenyl synthetase family protein -
  K4200_RS03945 (K4200_03945) - 795720..796535 (+) 816 WP_002378128.1 TlyA family RNA methyltransferase -
  K4200_RS03950 (K4200_03950) - 796911..797468 (+) 558 WP_002361405.1 matrixin family metalloprotease -
  K4200_RS14525 - 797473..797958 (+) 486 WP_242693014.1 hypothetical protein -
  K4200_RS14530 - 797959..798333 (+) 375 WP_023895400.1 hypothetical protein -
  K4200_RS03960 (K4200_03960) - 798465..798914 (+) 450 WP_002358881.1 arginine repressor -
  K4200_RS03965 (K4200_03965) recN 798932..800605 (+) 1674 WP_010822634.1 DNA repair protein RecN Machinery gene
  K4200_RS03970 (K4200_03970) - 800697..800807 (-) 111 WP_002383399.1 DUF4044 domain-containing protein -
  K4200_RS03975 (K4200_03975) - 800875..801840 (-) 966 WP_002387038.1 magnesium transporter CorA family protein -
  K4200_RS03980 (K4200_03980) - 802085..802477 (+) 393 WP_002383401.1 DUF3397 domain-containing protein -
  K4200_RS03985 (K4200_03985) mraZ 802711..803196 (+) 486 WP_002383402.1 division/cell wall cluster transcriptional repressor MraZ -
  K4200_RS03990 (K4200_03990) rsmH 803211..804167 (+) 957 WP_002355891.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  K4200_RS03995 (K4200_03995) ftsL 804184..804591 (+) 408 WP_002358883.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62641.08 Da        Isoelectric Point: 4.5772

>NTDB_id=600311 K4200_RS03965 WP_010822634.1 798932..800605(+) (recN) [Enterococcus faecalis strain E006]
MLQELSVKNFAIISSLQLEFQMGMTVLTGETGAGKSIIIDAMGLLTGGRGSSDYIRQGANKCTLEGLFSMPKSQELKKLL
EELGIETEEDSLVIQRDISASGKNVCRVNGRIVNITNLKRIGEYLVDIHGQNEHQELMQSERHIDMLDEFGGKKLLAVKE
KYTQAYQEYRALEAKVRKRQKNEKEFAQRMDMLHFQSDEIASAQLVAGEEEQLLEERNKLNNFQKIADALTISYAALNGE
DDSSLDKIGTSMNELASIESLDPEYKSLSDTVQNAYYLLQEASGDLSRLIDGLELDEGRLNEVENRLELIRQMKRKYGDS
IETILSYYEEITKELAEADFLEGGTGDLEALLAEKQQAAHQQALALRKERKRLAKELEQQILTELKELYLERTEFEVRFT
ELEHLQENGLDGIEFYITTNPGEPLKPLVRVASGGELSRVMLAMKTIFSQTQGITSIVFDEVDTGVSGRVAQAIADKIYQ
ISENSQVLCITHLPQVAAVADEHYFIEKEIVAGRTETSVRILSEKERVNEIARMLAGSEITKLTIEHAQELLAMAKK

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=600311 K4200_RS03965 WP_010822634.1 798932..800605(+) (recN) [Enterococcus faecalis strain E006]
ATGTTACAAGAACTTTCCGTGAAAAATTTTGCGATTATCTCTTCGTTACAATTAGAGTTTCAAATGGGTATGACCGTTTT
AACGGGAGAAACGGGTGCGGGGAAATCCATCATTATTGATGCAATGGGATTACTCACAGGCGGACGCGGCTCCAGTGACT
ATATTCGTCAAGGAGCAAATAAATGCACCTTAGAAGGACTTTTTTCAATGCCGAAAAGTCAAGAATTAAAGAAATTATTA
GAAGAATTAGGTATTGAAACAGAAGAAGATTCTTTAGTGATTCAACGAGATATTTCCGCTTCTGGTAAAAATGTTTGCCG
TGTCAACGGACGGATTGTCAACATTACTAATTTAAAAAGAATTGGGGAATATTTAGTAGATATTCATGGCCAAAACGAAC
ATCAAGAATTGATGCAAAGTGAACGCCATATTGATATGTTAGATGAATTTGGTGGGAAAAAACTTTTAGCAGTCAAAGAA
AAATATACACAGGCGTATCAAGAGTATCGCGCACTCGAAGCCAAAGTCAGAAAGCGACAAAAAAATGAAAAAGAATTTGC
CCAAAGAATGGACATGCTTCATTTTCAAAGTGATGAAATTGCTAGTGCACAGTTAGTCGCTGGCGAAGAAGAACAATTGT
TAGAAGAACGCAATAAACTGAACAATTTTCAAAAGATTGCTGATGCACTGACGATTAGTTATGCCGCGCTAAATGGTGAA
GACGATAGTAGTTTGGATAAAATCGGAACAAGTATGAATGAACTCGCTTCGATTGAATCCCTTGATCCAGAATATAAATC
ATTGTCAGATACTGTTCAAAATGCTTACTACTTACTACAAGAAGCTAGTGGAGATCTTTCTAGGCTGATTGATGGCTTAG
AACTAGATGAAGGCCGCTTGAATGAAGTAGAAAATCGTTTGGAATTAATCCGTCAAATGAAACGTAAATATGGCGATTCA
ATCGAAACGATTTTATCTTACTATGAAGAAATCACCAAAGAGTTAGCAGAGGCTGATTTTTTGGAAGGTGGTACAGGTGA
CTTAGAAGCGTTGCTTGCAGAGAAACAACAAGCCGCTCATCAACAAGCGTTAGCTTTACGAAAAGAACGAAAGCGCCTAG
CCAAAGAGCTCGAACAACAAATTTTAACCGAATTAAAAGAACTATATTTGGAGCGAACTGAATTTGAAGTCCGCTTTACA
GAGCTTGAGCATTTACAAGAAAATGGCTTAGACGGAATAGAATTTTATATTACTACTAACCCAGGGGAACCATTAAAACC
GTTAGTTCGGGTGGCTTCTGGCGGAGAACTTTCGCGAGTGATGTTGGCTATGAAAACAATCTTTTCTCAAACGCAAGGGA
TCACTAGTATTGTTTTTGATGAAGTGGATACAGGAGTTAGTGGCCGAGTAGCACAGGCGATTGCCGATAAAATTTATCAA
ATTTCAGAAAATTCGCAGGTGTTGTGTATCACGCACTTGCCACAAGTGGCGGCCGTTGCCGATGAACATTATTTTATTGA
AAAAGAAATCGTGGCGGGGCGGACAGAAACAAGCGTCCGAATTTTATCTGAAAAAGAGCGAGTAAACGAAATTGCGCGTA
TGCTCGCAGGAAGTGAAATTACGAAATTAACCATTGAACATGCACAAGAGCTGTTGGCGATGGCGAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.517

100

0.499