Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6J62_RS02150 Genome accession   NZ_AP018779
Coordinates   425577..426230 (-) Length   217 a.a.
NCBI ID   WP_006995324.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-8 isolate 10H15     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 420577..431230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J62_RS02150 (CHBNIII8_03940) sxy/tfoX 425577..426230 (-) 654 WP_006995324.1 DNA transformation protein TfoX Regulator
  K6J62_RS02155 (CHBNIII8_03950) recA 426603..427667 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  K6J62_RS02160 (CHBNIII8_03960) recX 427747..428205 (+) 459 WP_044332964.1 recombination regulator RecX -
  K6J62_RS02165 crcB 428202..428588 (-) 387 WP_005658943.1 fluoride efflux transporter CrcB -
  K6J62_RS02170 (CHBNIII8_03980) - 428588..429406 (-) 819 WP_110431550.1 Cof-type HAD-IIB family hydrolase -
  K6J62_RS02175 (CHBNIII8_03990) - 429809..430813 (+) 1005 WP_005651072.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24987.35 Da        Isoelectric Point: 10.0171

>NTDB_id=60031 K6J62_RS02150 WP_006995324.1 425577..426230(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQVLRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=60031 K6J62_RS02150 WP_006995324.1 425577..426230(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGGTTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-107)

TfoX C-terminal domain (TfoX_C)

(121-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment