Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   K6978_RS14320 Genome accession   NZ_CP082214
Coordinates   3241341..3241742 (-) Length   133 a.a.
NCBI ID   WP_104562659.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain OH_261     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3236341..3246742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6978_RS14305 (K6978_14250) - 3238355..3240391 (-) 2037 WP_104603166.1 methyl-accepting chemotaxis protein -
  K6978_RS14310 (K6978_14255) - 3240431..3240961 (-) 531 WP_039413900.1 chemotaxis protein CheW -
  K6978_RS14315 (K6978_14260) - 3240961..3241323 (-) 363 WP_104603165.1 response regulator -
  K6978_RS14320 (K6978_14265) pilG 3241341..3241742 (-) 402 WP_104562659.1 twitching motility response regulator PilG Regulator
  K6978_RS14325 (K6978_14270) gshB 3241981..3242931 (+) 951 WP_104603164.1 glutathione synthase -
  K6978_RS14330 (K6978_14275) - 3242928..3243803 (+) 876 WP_104603163.1 energy transducer TonB -
  K6978_RS14335 (K6978_14280) - 3243882..3244127 (-) 246 Protein_2808 ADP-ribosylglycohydrolase family protein -
  K6978_RS14340 (K6978_14285) tsaB 3244124..3244843 (-) 720 WP_104603162.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14699.09 Da        Isoelectric Point: 6.9539

>NTDB_id=600233 K6978_RS14320 WP_104562659.1 3241341..3241742(-) (pilG) [Xanthomonas cucurbitae strain OH_261]
MTENMAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=600233 K6978_RS14320 WP_104562659.1 3241341..3241742(-) (pilG) [Xanthomonas cucurbitae strain OH_261]
ATGACTGAAAACATGGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTCATCGACGATTCGAAGACCATCCGCCG
CACCGCCGAAACGCTGCTGAAGCGGGAAGGTTGTGAGGTGGTGACAGCGACCGATGGTTTCGAGGCACTGGCCAAGATCG
CCGACCAGCAACCGCAGATCATTTTCGTGGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGTGCGTTGATCAAG
GGCAACCAGCTCTTTAAATCGACGCCGGTCATCATGCTGTCGTCCAAGGATGGCCTGTTCGACAAGGCGCGTGGCCGCAT
CGTCGGTTCCGAGCAGTATCTGACCAAGCCATTCACCCGTGAAGAACTACTGAGCGCGATCCGCACCTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684