Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDL73_RS08640 Genome accession   NZ_CP098503
Coordinates   1638786..1638929 (-) Length   47 a.a.
NCBI ID   WP_012503975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10268     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1633786..1643929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL73_RS08620 (NDL73_11000) pilA 1635119..1636372 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NDL73_RS08625 (NDL73_11005) - 1636450..1636623 (-) 174 WP_167550559.1 hypothetical protein -
  NDL73_RS08630 (NDL73_11010) - 1636637..1637341 (-) 705 WP_260253279.1 opacity family porin -
  NDL73_RS08635 (NDL73_11020) pilE 1637911..1638417 (-) 507 WP_260253272.1 pilin Machinery gene
  NDL73_RS08640 (NDL73_11025) pilE 1638786..1638929 (-) 144 WP_012503975.1 hypothetical protein Machinery gene
  NDL73_RS08645 (NDL73_11030) - 1639034..1639114 (-) 81 Protein_1661 pilin -
  NDL73_RS08650 (NDL73_11035) - 1639232..1639636 (-) 405 Protein_1662 pilin -
  NDL73_RS08655 (NDL73_11040) - 1640173..1640589 (-) 417 Protein_1663 pilin -
  NDL73_RS08660 (NDL73_11045) lpxC 1640689..1641612 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NDL73_RS11820 - 1642104..1642826 (-) 723 WP_374110874.1 pilin -
  NDL73_RS08680 (NDL73_11065) - 1642852..1643067 (-) 216 Protein_1666 pilin -
  NDL73_RS08685 (NDL73_11070) - 1643440..1643571 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5048.57 Da        Isoelectric Point: 7.2429

>NTDB_id=600201 NDL73_RS08640 WP_012503975.1 1638786..1638929(-) (pilE) [Neisseria gonorrhoeae strain 10268]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=600201 NDL73_RS08640 WP_012503975.1 1638786..1638929(-) (pilE) [Neisseria gonorrhoeae strain 10268]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447