Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NDK36_RS21625 Genome accession   NZ_CP098491
Coordinates   4053891..4054685 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain NB205     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4048891..4059685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS21590 (NDK36_21590) - 4049023..4049577 (-) 555 WP_015715050.1 SdpA family antimicrobial peptide system protein -
  NDK36_RS21595 (NDK36_21595) - 4049761..4050396 (-) 636 WP_014481470.1 SdpI family protein -
  NDK36_RS21600 (NDK36_21600) - 4050396..4050680 (-) 285 WP_015715052.1 autorepressor SdpR family transcription factor -
  NDK36_RS21605 (NDK36_21605) rocR 4050907..4052292 (+) 1386 WP_003244510.1 arginine utilization regulatory protein RocR -
  NDK36_RS21610 (NDK36_21610) - 4052274..4052426 (-) 153 Protein_4215 ATP-binding protein -
  NDK36_RS21615 (NDK36_21615) - 4052454..4052586 (-) 133 Protein_4216 hypothetical protein -
  NDK36_RS21620 (NDK36_21620) htrA 4052607..4053809 (-) 1203 WP_014481472.1 serine protease HtrC Regulator
  NDK36_RS21625 (NDK36_21625) vicX 4053891..4054685 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  NDK36_RS21630 (NDK36_21630) walI 4054707..4055549 (-) 843 WP_014481473.1 WalRK two-component regulatory system regulator WalI -
  NDK36_RS21635 (NDK36_21635) walH 4055536..4056903 (-) 1368 WP_014481474.1 WalRK two-component regulatory system regulator WalH -
  NDK36_RS21640 (NDK36_21640) walK 4056893..4058728 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  NDK36_RS21645 (NDK36_21645) walR 4058736..4059443 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=600152 NDK36_RS21625 WP_003226939.1 4053891..4054685(-) (vicX) [Bacillus subtilis strain NB205]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=600152 NDK36_RS21625 WP_003226939.1 4053891..4054685(-) (vicX) [Bacillus subtilis strain NB205]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTTGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGGAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTGGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGGAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAAAC
AGTGAAGTCGTTCGGCGGACTTGATGTTGAATCATTTGGCGTTTCCCACGATGCGGCCGAGCCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCATGATGTCGGCATGCTGCAAATGGGAAGATACCCGTGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53