Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NDK36_RS19585 Genome accession   NZ_CP098491
Coordinates   3651168..3652301 (-) Length   377 a.a.
NCBI ID   WP_014481175.1    Uniprot ID   -
Organism   Bacillus subtilis strain NB205     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3646168..3657301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS19545 (NDK36_19545) ywnA 3646298..3646699 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  NDK36_RS19550 (NDK36_19550) ureC 3646834..3648543 (-) 1710 WP_014481168.1 urease subunit alpha -
  NDK36_RS19555 (NDK36_19555) ureB 3648540..3648914 (-) 375 WP_014481169.1 urease subunit beta -
  NDK36_RS19560 (NDK36_19560) ureA 3648911..3649228 (-) 318 WP_014478236.1 urease subunit gamma -
  NDK36_RS19565 (NDK36_19565) - 3649422..3649580 (-) 159 WP_158332665.1 hypothetical protein -
  NDK36_RS22545 - 3649891..3650059 (-) 169 Protein_3803 urea ABC transporter substrate-binding protein -
  NDK36_RS19575 (NDK36_19575) csbD 3650272..3650460 (-) 189 WP_014481173.1 stress response protein CsbD -
  NDK36_RS19580 (NDK36_19580) - 3650533..3651012 (-) 480 WP_026113664.1 hypothetical protein -
  NDK36_RS19585 (NDK36_19585) rapC 3651168..3652301 (-) 1134 WP_014481175.1 response regulator aspartate phosphatase RapB Regulator
  NDK36_RS19590 (NDK36_19590) moaA 3652493..3653518 (-) 1026 WP_014481177.1 GTP 3',8-cyclase MoaA -
  NDK36_RS19595 (NDK36_19595) fdhD 3653534..3654322 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  NDK36_RS19600 (NDK36_19600) - 3654555..3654716 (-) 162 WP_003227706.1 hypothetical protein -
  NDK36_RS19605 (NDK36_19605) ywmD 3654811..3655485 (-) 675 WP_014481179.1 VWA domain-containing protein -
  NDK36_RS19610 (NDK36_19610) - 3655538..3655678 (-) 141 WP_014481180.1 hypothetical protein -
  NDK36_RS19615 (NDK36_19615) ywmC 3655809..3656492 (-) 684 WP_014481181.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45041.13 Da        Isoelectric Point: 4.7537

>NTDB_id=600142 NDK36_RS19585 WP_014481175.1 3651168..3652301(-) (rapC) [Bacillus subtilis strain NB205]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHHEQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=600142 NDK36_RS19585 WP_014481175.1 3651168..3652301(-) (rapC) [Bacillus subtilis strain NB205]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422