Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K6973_RS10060 Genome accession   NZ_CP082206
Coordinates   2023210..2024571 (-) Length   453 a.a.
NCBI ID   WP_222819721.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2018210..2029571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS10035 (K6973_10035) - 2018933..2020201 (-) 1269 WP_218654854.1 MFS transporter -
  K6973_RS10040 (K6973_10040) - 2020296..2020997 (-) 702 WP_222819348.1 hypothetical protein -
  K6973_RS10045 (K6973_10045) - 2021001..2021447 (-) 447 WP_222819349.1 LytTR family DNA-binding domain-containing protein -
  K6973_RS10050 (K6973_10050) - 2021674..2022390 (-) 717 WP_222819350.1 TIGR00266 family protein -
  K6973_RS10055 (K6973_10055) - 2022526..2023020 (-) 495 WP_003053380.1 carbonic anhydrase -
  K6973_RS10060 (K6973_10060) radA 2023210..2024571 (-) 1362 WP_222819721.1 DNA repair protein RadA Machinery gene
  K6973_RS10065 (K6973_10065) - 2024654..2025100 (-) 447 WP_222819351.1 dUTP diphosphatase -
  K6973_RS10070 (K6973_10070) - 2025208..2025975 (-) 768 WP_138126588.1 epoxyqueuosine reductase QueH -
  K6973_RS10075 (K6973_10075) - 2026094..2027878 (-) 1785 WP_222819352.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49389.64 Da        Isoelectric Point: 5.8146

>NTDB_id=600126 K6973_RS10060 WP_222819721.1 2023210..2024571(-) (radA) [Streptococcus dysgalactiae strain DY107]
MAKQKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIMSPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLFLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNGIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=600126 K6973_RS10060 WP_222819721.1 2023210..2024571(-) (radA) [Streptococcus dysgalactiae strain DY107]
ATAGCAAAGCAAAAAGCAACCTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCTTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCTGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAATCGTGTC
CTTGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCTTGCTCTTGCA
GGTATCTACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGGA
GTGAGCGTTTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACTTGAATCCAGATTTCTTGATTATTGATTCTATCCAGACCATTATGAGTCCTGATATTACAGGTGTTCAAGGATCAGT
GAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACTAACAACATTGCAACCTTTATTGTAGGACATG
TTACCAAGGAAGGAACCTTAGCTGGTCCCCGTATGTTAGAACATATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCATACTTTTCGCATCCTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGCATTTTTGAAATGCAATC
AGCTGGACTCGTTGAGGTCTTGAACCCAAGTCAGGTCTTTCTTGAAGAACGATTAGATGGTGCTACAGGCTCCGCCATTG
TGGTGACCATGGAGGGTAGTCGTCCAATTTTAGCGGAAGTCCAATCTTTGGTAACCCCAACCGTTTTTGGTAATGCTAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATCATGGCAGTCTTAGAAAAACGCTGTGGGCTTTTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGCTAGACGAACCTGCTATTGATTTAGCTGTAGCCGTGGCCA
TCGCATCCAGTTATAAGGAAAAACCCACTAACCCTCAGGAAGCCTTCTTAGGAGAGATTGGATTGACTGGTGAGATTCGG
CGGGTGACTCGTATCGAACAACGGATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGGTATTGAAGTGGTAGGTGTGACAACAGTTGGTCAGGTTTTAAAGGCTGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(57-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.283

99.779

0.861
  radA Streptococcus pneumoniae D39

86.062

99.779

0.859
  radA Streptococcus pneumoniae R6

86.062

99.779

0.859
  radA Streptococcus pneumoniae Rx1

86.062

99.779

0.859
  radA Streptococcus mitis SK321

86.062

99.779

0.859
  radA Streptococcus pneumoniae TIGR4

86.062

99.779

0.859
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

100

0.623