Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   NDK36_RS16260 Genome accession   NZ_CP098491
Coordinates   3026091..3026954 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis strain NB205     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3021091..3031954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS16225 (NDK36_16225) mrpE 3021259..3021735 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NDK36_RS16230 (NDK36_16230) mrpF 3021735..3022019 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NDK36_RS16235 (NDK36_16235) mnhG 3022003..3022377 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  NDK36_RS16240 (NDK36_16240) yuxO 3022416..3022796 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  NDK36_RS16245 (NDK36_16245) comA 3022815..3023459 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NDK36_RS16250 (NDK36_16250) comP 3023540..3025852 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  NDK36_RS16255 (NDK36_16255) comX 3025868..3026089 (-) 222 WP_014480704.1 competence pheromone ComX -
  NDK36_RS16260 (NDK36_16260) comQ 3026091..3026954 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  NDK36_RS16265 (NDK36_16265) degQ 3027139..3027279 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NDK36_RS16270 (NDK36_16270) - 3027501..3027626 (+) 126 WP_003228793.1 hypothetical protein -
  NDK36_RS16275 (NDK36_16275) - 3027740..3028108 (+) 369 WP_014477834.1 hypothetical protein -
  NDK36_RS16280 (NDK36_16280) pdeH 3028084..3029313 (-) 1230 WP_014480707.1 cyclic di-GMP phosphodiesterase -
  NDK36_RS16285 (NDK36_16285) pncB 3029449..3030921 (-) 1473 WP_014480708.1 nicotinate phosphoribosyltransferase -
  NDK36_RS16290 (NDK36_16290) pncA 3030937..3031488 (-) 552 WP_014480709.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=600126 NDK36_RS16260 WP_014480705.1 3026091..3026954(-) (comQ) [Bacillus subtilis strain NB205]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=600126 NDK36_RS16260 WP_014480705.1 3026091..3026954(-) (comQ) [Bacillus subtilis strain NB205]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439