Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   K6973_RS07690 Genome accession   NZ_CP082206
Coordinates   1516847..1518649 (-) Length   600 a.a.
NCBI ID   WP_218654662.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1511847..1523649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS07665 (K6973_07665) - 1512512..1513219 (-) 708 WP_138125990.1 O-methyltransferase -
  K6973_RS07670 (K6973_07670) - 1513271..1514482 (-) 1212 WP_084916498.1 OFA family MFS transporter -
  K6973_RS07675 (K6973_07675) - 1514817..1515440 (-) 624 WP_218654659.1 HAD-IA family hydrolase -
  K6973_RS07680 (K6973_07680) - 1515440..1515982 (-) 543 WP_218654660.1 GNAT family N-acetyltransferase -
  K6973_RS07685 (K6973_07685) - 1516105..1516659 (-) 555 WP_218654661.1 NADPH-dependent FMN reductase -
  K6973_RS07690 (K6973_07690) pepF 1516847..1518649 (-) 1803 WP_218654662.1 oligoendopeptidase F Regulator
  K6973_RS07695 (K6973_07695) - 1518660..1519622 (-) 963 WP_218654663.1 competence protein CoiA family protein -
  K6973_RS07700 (K6973_07700) - 1519736..1520896 (-) 1161 WP_218654664.1 MFS transporter -
  K6973_RS07705 (K6973_07705) - 1520988..1521704 (-) 717 WP_218654665.1 pseudouridine synthase -
  K6973_RS07710 (K6973_07710) nagB 1521808..1522521 (-) 714 WP_218654666.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69224.99 Da        Isoelectric Point: 4.6827

>NTDB_id=600112 K6973_RS07690 WP_218654662.1 1516847..1518649(-) (pepF) [Streptococcus dysgalactiae strain DY107]
MTDNRSHLEEKYTWDLSTIFATDKDWETEVSGLASEIDAARDFAGHLLDSSANLLTITDTYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMALSQEDYQAFLAETPDLKRYHHFFDKLFQTRDHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPVVKNDKGEDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYDSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQDVLGLDELKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYAELNEKYYGLSKDDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQDDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLTELEALVAKGVHR

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=600112 K6973_RS07690 WP_218654662.1 1516847..1518649(-) (pepF) [Streptococcus dysgalactiae strain DY107]
ATGACAGATAATCGTAGTCATTTAGAAGAAAAGTACACTTGGGATTTGAGCACTATTTTTGCAACAGATAAGGATTGGGA
AACTGAAGTGAGTGGCTTAGCTAGTGAAATTGACGCGGCTAGGGATTTTGCAGGTCATTTACTAGATTCTAGCGCTAATC
TGTTGACAATTACAGATACTTATTTAGAGTTAGCTCGTCGTGTTGAAAAAGTCTATGTCTATGCTCATATGAAAAATGAT
CAAGACACGACTGTTGCTAAATATCAAGAATATCAGGCTAAGGCTTCGGGCTTGTATGCTAAATTTAGCGAAGTGTTTTC
ATTCTATGACCCAGAAGTTATGGCATTGAGTCAGGAAGATTACCAAGCTTTTCTTGCGGAAACTCCTGATTTAAAAAGGT
ATCATCATTTCTTTGACAAATTGTTCCAGACACGTGACCATGTGCTTAGCCAGGCTGAAGAGGAATTATTAGCAGGAGCC
CAAGAAATTTTCAATGGCGCTGAAGAAACCTTTAGCATTCTGGATAACGCTGATATTGTCTTTCCAGTAGTTAAAAATGA
TAAGGGGGAAGATGTTGAATTAACCCATGGTAACTTCATCAGTTTAATGGAATCTAAAGATCGTAGCGTTCGCCAAGCTG
CTTACGAGGCAATGTATAGCACTTATGAACAGTTCCAACACACTTATGCTAAAACCTTACAAACAAATGTTAAGGTTCAA
AATTACAAGGCGCGTGTTCATAAATACGATTCAGCACGTCAGGCTGCTATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
CGACACTTTATTAGAAACGGTTAACAAACATTTACCACTTTTACACCGTTACTTGAAACTTCGCCAAGATGTTCTTGGTT
TAGATGAGTTGAAGATGTATGATGTTTACACACCATTATCTGAAACAGACCTAGCCATTGGTTATGATGAGGCTTTGGAA
AAAGCTGAGAAGGTTTTGGCTGTTTTTGGTAAGGATTATGCAGACCGAGTGCACCGTGCCTTTACAGAACGTTGGATTGA
TGTTCATGTCAATAAAGGGAAGCGCTCTGGAGCTTATTCGGGTGGTTCCTACGACACCAATGCCTTTATGCTATTAAACT
GGCAAGATACCTTAGACAATCTATACACTTTAGTTCATGAAACTGGGCACAGTTTGCATTCTACTTTCACTCGTGAAACA
CAGCCTTATGTGTATGGAGATTACAGTATTTTCTTGGCAGAAATTGCATCCACAACTAATGAAAACATCATGACAGAAGC
TCTCTTAAATGAGGTGCAAGATGAGAAAGAACGCTTTGCCATTTTAAACCATTACCTTGACGGTTTCCGTGGTACTGTTT
TCCGTCAAACGCAATTTGCTGAGTTTGAACACGCGATCCATCAAGCTGATCAAAAAGGAGAAGTGTTAACGAGCGAATAC
CTCAACCAATTGTATGCTGAGTTGAATGAAAAGTATTATGGGTTGAGTAAAGATGATAATCATTTTATTCAGTATGAGTG
GGCACGTATTCCTCACTTCTATTACAATTATTATGTTTATCAGTATGCTACAGGTTTTGCAGCAGCAAGCTATTTAGCTG
ATAAGATTGTTCACGGAACGCAAGACGATATTGATCATTACTTGACTTACCTCAAGTCAGGAAATTCTGACTACCCACTT
GAGGTAATCGCTAAAGCGGGTGTTGATATGGCAAAAGGTGACTATCTTGAAGCAGCCTTTAAAGTCTTCGAAGAACGTCT
AACAGAACTTGAAGCCCTTGTTGCAAAGGGAGTTCATCGCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

72.12

99.833

0.72