Detailed information NTG0600112

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: NDK36_RS14110
• Genome accession: NZ_CP098491
• Coordinates: 2603303..2603908 (-)
• Length: 201 a.a.
• NCBI ID: WP_003229717.1
• Uniprot ID: O05392
• Organism: Bacillus subtilis strain NB205
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2598303..2608908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NDK36_RS14080 (NDK36_14080)	-	2599116..2599505 (+)	390	WP_014477528.1	TIGR04086 family membrane protein	-
NDK36_RS14085 (NDK36_14085)	yajC	2599562..2599828 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
NDK36_RS14090 (NDK36_14090)	tgt	2599865..2601010 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
NDK36_RS14095 (NDK36_14095)	queA	2601037..2602065 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
NDK36_RS14100 (NDK36_14100)	yrzS	2602095..2602295 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
NDK36_RS14105 (NDK36_14105)	ruvB	2602288..2603292 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
NDK36_RS14110 (NDK36_14110)	ruvA	2603303..2603908 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
NDK36_RS14115 (NDK36_14115)	bofC	2604047..2604559 (-)	513	WP_014480438.1	sporulation cell-cell signaling protein BofC	-
NDK36_RS14120 (NDK36_14120)	csbX	2604607..2605914 (-)	1308	WP_014480439.1	MFS transporter	-
NDK36_RS14125 (NDK36_14125)	iolG	2605985..2607010 (-)	1026	WP_014480440.1	inositol 2-dehydrogenase	-
NDK36_RS14130 (NDK36_14130)	yrzF	2607248..2607895 (+)	648	WP_014480441.1	phosphotransferase	-
NDK36_RS14135 (NDK36_14135)	-	2607941..2608063 (-)	123	WP_003229707.1	hypothetical protein	-
NDK36_RS14140 (NDK36_14140)	-	2608148..2608222 (+)	75	Protein_2741	hypothetical protein	-
NDK36_RS14145 (NDK36_14145)	-	2608226..2608594 (+)	369	WP_186437837.1	DUF5412 family protein	-
NDK36_RS14150 (NDK36_14150)	-	2608601..2608741 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22584.08 Da
• Isoelectric Point: 5.4072

>NTDB_id=600112 NDK36_RS14110 WP_003229717.1 2603303..2603908(-) (ruvA) [Bacillus subtilis strain NB205]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=600112 NDK36_RS14110 WP_003229717.1 2603303..2603908(-) (ruvA) [Bacillus subtilis strain NB205]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAGGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: O05392

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408