Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   NDK36_RS08355 Genome accession   NZ_CP098491
Coordinates   1576371..1577396 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain NB205     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1571371..1582396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS08320 (NDK36_08320) ylbE 1571671..1571910 (+) 240 WP_003232231.1 YlbE-like family protein -
  NDK36_RS08325 (NDK36_08325) ylbF 1572026..1572475 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  NDK36_RS08330 (NDK36_08330) ylbG 1572530..1572802 (+) 273 WP_009967171.1 YlbG family protein -
  NDK36_RS08335 (NDK36_08335) rsmD 1573125..1573679 (+) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NDK36_RS08340 (NDK36_08340) coaD 1573684..1574169 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  NDK36_RS08345 (NDK36_08345) spoVV 1574180..1575406 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  NDK36_RS08350 (NDK36_08350) ylbK 1575587..1576369 (+) 783 WP_003232221.1 patatin family protein -
  NDK36_RS08355 (NDK36_08355) sepM 1576371..1577396 (+) 1026 WP_003245451.1 protease DdcP Regulator
  NDK36_RS08360 (NDK36_08360) tmcAL 1577413..1578660 (-) 1248 WP_014479717.1 nucleotidyltransferase -
  NDK36_RS08365 (NDK36_08365) - 1578657..1578842 (-) 186 WP_003232215.1 hypothetical protein -
  NDK36_RS08370 (NDK36_08370) ylbN 1578870..1579388 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  NDK36_RS08375 (NDK36_08375) rpmF 1579410..1579589 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  NDK36_RS08380 (NDK36_08380) gerR 1579735..1580316 (+) 582 WP_014479720.1 sporulation specific transcriptional regulator GerR -
  NDK36_RS08385 (NDK36_08385) ylbP 1580373..1580855 (-) 483 WP_014476736.1 N-acetyltransferase -
  NDK36_RS08390 (NDK36_08390) panEA 1581015..1581911 (+) 897 WP_014479721.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=600067 NDK36_RS08355 WP_003245451.1 1576371..1577396(+) (sepM) [Bacillus subtilis strain NB205]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=600067 NDK36_RS08355 WP_003245451.1 1576371..1577396(+) (sepM) [Bacillus subtilis strain NB205]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGTCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402