Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NDK36_RS07930 Genome accession   NZ_CP098491
Coordinates   1494686..1495261 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis strain NB205     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489686..1500261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS07900 (NDK36_07900) dapD 1489874..1490584 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NDK36_RS07905 (NDK36_07905) dapI 1490654..1491778 (+) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  NDK36_RS07910 (NDK36_07910) ykuS 1491840..1492085 (+) 246 WP_003232382.1 YkuS family protein -
  NDK36_RS07915 (NDK36_07915) mscT 1492122..1492925 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  NDK36_RS07920 (NDK36_07920) ahpA 1493162..1493704 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  NDK36_RS07925 (NDK36_07925) ykuV 1493774..1494220 (+) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  NDK36_RS07930 (NDK36_07930) rok 1494686..1495261 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  NDK36_RS07940 (NDK36_07940) cse15 1496592..1497557 (-) 966 WP_014479669.1 spore protein Cse15 -
  NDK36_RS07945 (NDK36_07945) mobA 1497694..1498293 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  NDK36_RS07950 (NDK36_07950) moeB 1498344..1499363 (+) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=600064 NDK36_RS07930 WP_003232378.1 1494686..1495261(+) (rok) [Bacillus subtilis strain NB205]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=600064 NDK36_RS07930 WP_003232378.1 1494686..1495261(+) (rok) [Bacillus subtilis strain NB205]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1