Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   K6969_RS10400 Genome accession   NZ_CP082205
Coordinates   2162471..2164264 (-) Length   597 a.a.
NCBI ID   WP_171942700.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2157471..2169264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS10375 (K6969_10265) - 2157792..2158157 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  K6969_RS10380 (K6969_10270) - 2158279..2159181 (-) 903 WP_002942329.1 ABC transporter permease -
  K6969_RS10385 (K6969_10275) opp4B 2159195..2160151 (-) 957 WP_002942327.1 oligopeptide ABC transporter permease -
  K6969_RS10390 (K6969_10280) - 2160153..2161094 (-) 942 WP_053866823.1 ATP-binding cassette domain-containing protein -
  K6969_RS10395 (K6969_10285) - 2161097..2162095 (-) 999 WP_029998976.1 ABC transporter ATP-binding protein -
  K6969_RS10400 (K6969_10290) oppA 2162471..2164264 (-) 1794 WP_171942700.1 oligopeptide ABC transporter substrate-binding protein Regulator
  K6969_RS10405 (K6969_10295) pbp3 2164479..2165720 (+) 1242 WP_029173860.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  K6969_RS10410 (K6969_10300) sufB 2165928..2167343 (-) 1416 WP_053864107.1 Fe-S cluster assembly protein SufB -
  K6969_RS10415 (K6969_10305) sufU 2167799..2168239 (-) 441 WP_171942701.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 65694.38 Da        Isoelectric Point: 4.4685

>NTDB_id=600064 K6969_RS10400 WP_171942700.1 2162471..2164264(-) (oppA) [Streptococcus suis strain AKJ18]
MKKTTKLFALAGITLLSASVLAACGAKSSSSSSEQNLSFPSEVKQDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDS
TFGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDRFL
NIVGMDEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPW
KIKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEY
ISFNFGKYDESAKKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAK
KLLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAI
DMYAGGWSTGYDPNPTGLWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIT
ALNKRVKNYDSNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=600064 K6969_RS10400 WP_171942700.1 2162471..2164264(-) (oppA) [Streptococcus suis strain AKJ18]
ATGAAAAAGACAACAAAACTCTTTGCCTTAGCAGGTATCACACTCTTATCTGCATCTGTTTTAGCAGCTTGTGGTGCTAA
GTCGTCATCAAGTTCATCAGAACAAAACTTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTC
AATTGAAATATGCATTTGTTTCAGCTACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCA
ACATTTGGTGGAATGGTTGATATTTCAATGTTTGGTTACGATGGAGATCGTAAGTTAGATGATTCTGGTCTTGCTAAAGC
TGAATTTGATGTAAAAGGTAAGAAAATCACTGTTAGTTTGACAGGTAAAGATTACAAGTGGTCAGATGGTGAGCCATTTA
CAATCAATGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAGATTCTTG
AACATTGTGGGTATGGATGAATTTGTTGCTGGAACTGCTTCAGATATCTCAGGTCTTAAGAAAATTGATGACTACACAGT
AGAATTGACTGTAAAAGAAATGTCACCTTCTATGATGTATGCCGGTGGTGATGTACCTGCCTATATCCAACCAGAACATA
TCTATAAAGACATCCCTGTTGCAGATTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGG
AAAATCAAGGAAATCGTAAACGGTGAGTCTATCACTTATGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAAC
AAGCTCATTGAAGATTGACATCGTATCTCCAGATACTATTGTTTCTGAAATGAAAGCTGGTAACTATGACATCGCAGATA
TGCCTGTTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTTCTTTGGACTCAGCTTATGAATAC
ATTTCATTTAATTTTGGTAAATATGACGAGTCTGCTAAGAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAA
ACTTCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAA
ACTCATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAA
AAACTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGATGGTAAAGAGTTCAAGAT
TACCTTTGCAGCTCGTAAACGTACGGAAGCAAACGAAGCACTTGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCT
TGAACGTTGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATT
GATATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAACAGGACTTTGGGGTCCAATCGCAGCCTTCAACAT
GTCACGTTTCGTGTCTGATGAAAATACTAAGTTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATG
TTGAGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATCACA
GCCCTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGA
ACTTACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(104-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.295

100

0.923