Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NDK36_RS03830 Genome accession   NZ_CP098491
Coordinates   734358..735488 (+) Length   376 a.a.
NCBI ID   WP_014479091.1    Uniprot ID   -
Organism   Bacillus subtilis strain NB205     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 729358..740488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS03810 (NDK36_03810) - 729698..729895 (-) 198 WP_014479085.1 hypothetical protein -
  NDK36_RS03815 (NDK36_03815) - 730494..730967 (-) 474 WP_014479086.1 immunity protein YezG family protein -
  NDK36_RS03820 (NDK36_03820) yeeF 730972..732981 (-) 2010 WP_031600245.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  NDK36_RS03825 (NDK36_03825) - 733193..734214 (+) 1022 Protein_702 hypothetical protein -
  NDK36_RS03830 (NDK36_03830) rapC 734358..735488 (+) 1131 WP_014479091.1 response regulator aspartate phosphatase RapH Regulator
  NDK36_RS03835 (NDK36_03835) phrH 735478..735651 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  NDK36_RS03840 (NDK36_03840) yeeI 735811..736530 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  NDK36_RS03845 (NDK36_03845) - 736664..737281 (+) 618 WP_049832634.1 spore coat protein -
  NDK36_RS03850 (NDK36_03850) yezE 737396..737980 (+) 585 WP_014479093.1 TetR/AcrR family transcriptional regulator -
  NDK36_RS03855 (NDK36_03855) cotJA 738157..738405 (+) 249 WP_014479094.1 spore coat-associated protein CotJA -
  NDK36_RS03860 (NDK36_03860) cotJB 738389..738652 (+) 264 WP_014479095.1 spore coat protein CotJB -
  NDK36_RS03865 (NDK36_03865) cotJC 738667..739236 (+) 570 WP_014479096.1 spore coat protein CotJC -
  NDK36_RS03870 (NDK36_03870) yesJ 739361..739903 (+) 543 WP_014479097.1 GNAT family N-acetyltransferase -
  NDK36_RS03875 (NDK36_03875) yesK 739926..740228 (+) 303 Protein_712 YesK-like family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.39 Da        Isoelectric Point: 5.9937

>NTDB_id=600030 NDK36_RS03830 WP_014479091.1 734358..735488(+) (rapC) [Bacillus subtilis strain NB205]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=600030 NDK36_RS03830 WP_014479091.1 734358..735488(+) (rapC) [Bacillus subtilis strain NB205]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402