Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   NDK36_RS02400 Genome accession   NZ_CP098491
Coordinates   468364..468798 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain NB205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 463364..473798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS02370 (NDK36_02370) ydaD 464011..464871 (+) 861 WP_014478865.1 SDR family oxidoreductase -
  NDK36_RS02375 (NDK36_02375) lyxE 464887..465390 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  NDK36_RS02380 (NDK36_02380) ydaF 465478..466029 (+) 552 WP_014478866.1 GNAT family protein -
  NDK36_RS02385 (NDK36_02385) ydaG 466107..466529 (+) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  NDK36_RS02390 (NDK36_02390) amj 467035..467844 (+) 810 WP_014478868.1 lipid II flippase Amj -
  NDK36_RS02395 (NDK36_02395) ydzA 467889..468179 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  NDK36_RS02400 (NDK36_02400) lrpC 468364..468798 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  NDK36_RS02405 (NDK36_02405) topB 468863..471046 (+) 2184 WP_014478870.1 DNA topoisomerase III -
  NDK36_RS02410 (NDK36_02410) mutT 471159..471608 (+) 450 WP_014478871.1 8-oxo-dGTP diphosphatase MutT -
  NDK36_RS02415 (NDK36_02415) poxB 471675..473399 (+) 1725 WP_014478872.1 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=600027 NDK36_RS02400 WP_003246585.1 468364..468798(+) (lrpC) [Bacillus subtilis strain NB205]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=600027 NDK36_RS02400 WP_003246585.1 468364..468798(+) (lrpC) [Bacillus subtilis strain NB205]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1