Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   K6969_RS00570 Genome accession   NZ_CP082205
Coordinates   99807..100520 (+) Length   237 a.a.
NCBI ID   WP_029173724.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 94807..105520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS00560 (K6969_00545) treC 95873..97498 (-) 1626 WP_321537430.1 alpha,alpha-phosphotrehalase -
  K6969_RS00565 (K6969_00550) treP 97579..99573 (-) 1995 WP_171943156.1 PTS system trehalose-specific EIIBC component -
  K6969_RS00570 (K6969_00555) treR 99807..100520 (+) 714 WP_029173724.1 trehalose operon repressor Regulator
  K6969_RS00575 (K6969_00560) - 100578..100889 (+) 312 WP_002935948.1 hypothetical protein -
  K6969_RS00580 (K6969_00565) - 100886..101434 (+) 549 WP_029173726.1 CvpA family protein -
  K6969_RS00585 (K6969_00570) - 101538..103871 (+) 2334 WP_029173727.1 endonuclease MutS2 -
  K6969_RS00590 (K6969_00575) - 103895..104548 (+) 654 WP_029173728.1 GNAT family N-acetyltransferase -
  K6969_RS00595 (K6969_00580) tnpA 104707..105180 (+) 474 WP_024378560.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27212.17 Da        Isoelectric Point: 8.2156

>NTDB_id=600021 K6969_RS00570 WP_029173724.1 99807..100520(+) (treR) [Streptococcus suis strain AKJ18]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
KYLENKLGLDIAYAQKEITVEPTSREERDLMQIQDDYLVLIKSRVYLGDTRQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=600021 K6969_RS00570 WP_029173724.1 99807..100520(+) (treR) [Streptococcus suis strain AKJ18]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAACAGCTCCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGATGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAT
AAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAGCCGAGAAGA
ACGAGATTTGATGCAGATTCAGGATGATTATCTGGTGTTGATAAAATCCAGGGTCTACTTAGGAGATACGCGACAATTTC
AATACACTGAAAGTAAGCACAAGATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515