Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K6969_RS00415 Genome accession   NZ_CP082205
Coordinates   67460..68827 (+) Length   455 a.a.
NCBI ID   WP_171943025.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 53448..76332 67460..68827 within 0


Gene organization within MGE regions


Location: 53448..76332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS00310 (K6969_00300) - 53448..53717 (-) 270 WP_321537426.1 hypothetical protein -
  K6969_RS00315 (K6969_00305) - 53916..54774 (+) 859 Protein_42 IS630 family transposase -
  K6969_RS00320 - 55266..55769 (-) 504 WP_253911828.1 hypothetical protein -
  K6969_RS00325 (K6969_00310) - 55825..56226 (-) 402 WP_029174009.1 hypothetical protein -
  K6969_RS00330 (K6969_00315) - 56291..56815 (-) 525 WP_029174010.1 hypothetical protein -
  K6969_RS00335 (K6969_00320) - 56836..57009 (-) 174 WP_162841090.1 hypothetical protein -
  K6969_RS00340 (K6969_00325) - 57350..58948 (-) 1599 WP_029174011.1 hypothetical protein -
  K6969_RS00345 (K6969_00330) - 58945..59454 (-) 510 WP_029174012.1 hypothetical protein -
  K6969_RS00350 (K6969_00335) - 59624..59764 (-) 141 WP_171943019.1 hypothetical protein -
  K6969_RS00355 (K6969_00340) - 59751..60035 (-) 285 WP_029174013.1 hypothetical protein -
  K6969_RS00360 (K6969_00345) - 60069..60362 (-) 294 WP_228381568.1 hypothetical protein -
  K6969_RS00365 (K6969_00350) - 60359..60508 (-) 150 WP_171943020.1 hypothetical protein -
  K6969_RS12320 - 60518..60715 (-) 198 WP_029174014.1 hypothetical protein -
  K6969_RS00370 (K6969_00355) - 60715..61143 (-) 429 WP_029174015.1 hypothetical protein -
  K6969_RS00375 (K6969_00360) - 61613..62239 (-) 627 WP_029174016.1 Rha family transcriptional regulator -
  K6969_RS00380 (K6969_00365) - 62294..62458 (-) 165 Protein_56 helix-turn-helix domain-containing protein -
  K6969_RS00385 (K6969_00370) - 62497..62691 (-) 195 WP_032538261.1 helix-turn-helix transcriptional regulator -
  K6969_RS00390 (K6969_00375) - 62890..63618 (+) 729 WP_228381569.1 helix-turn-helix transcriptional regulator -
  K6969_RS00395 (K6969_00380) - 63984..64988 (+) 1005 WP_171943021.1 virulence RhuM family protein -
  K6969_RS00400 (K6969_00385) - 65227..66372 (+) 1146 WP_029174019.1 tyrosine-type recombinase/integrase -
  K6969_RS00405 (K6969_00390) - 66470..66913 (+) 444 WP_024388517.1 dUTP diphosphatase -
  K6969_RS00410 (K6969_00395) - 66920..67453 (+) 534 WP_029174020.1 histidine phosphatase family protein -
  K6969_RS00415 (K6969_00400) radA 67460..68827 (+) 1368 WP_171943025.1 DNA repair protein RadA Machinery gene
  K6969_RS00420 (K6969_00405) - 68952..69446 (+) 495 WP_171943022.1 beta-class carbonic anhydrase -
  K6969_RS00425 (K6969_00410) - 69747..70463 (+) 717 WP_029945730.1 TIGR00266 family protein -
  K6969_RS00430 (K6969_00415) - 70642..71088 (+) 447 WP_171943023.1 LytTR family DNA-binding domain-containing protein -
  K6969_RS00435 (K6969_00420) - 71093..71752 (+) 660 WP_029174024.1 LiaF transmembrane domain-containing protein -
  K6969_RS00440 (K6969_00425) - 71844..73132 (+) 1289 Protein_68 MFS transporter -
  K6969_RS00445 (K6969_00430) - 73121..74074 (-) 954 WP_171943024.1 IS30 family transposase -
  K6969_RS00450 (K6969_00435) - 74743..75258 (+) 516 Protein_70 IS110 family transposase -
  K6969_RS00455 (K6969_00440) - 75474..76332 (+) 859 Protein_71 IS630 family transposase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49843.33 Da        Isoelectric Point: 6.1911

>NTDB_id=600020 K6969_RS00415 WP_171943025.1 67460..68827(+) (radA) [Streptococcus suis strain AKJ18]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGSVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVVGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=600020 K6969_RS00415 WP_171943025.1 67460..68827(+) (radA) [Streptococcus suis strain AKJ18]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCTAAGTATCTGGGTCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGACCAATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCTCGCACCAAGACCAATATGGAAGAGTTTAAC
CGCGTCCTTGGTGGCGGCGTGGTGCCGGGCAGTCTGGTCCTGATTGGAGGCGATCCAGGGATTGGCAAGTCCACCTTGCT
CCTGCAAGTATCCACCCAGCTGTCTACCATTGGCAGCGTCCTCTACGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACTGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCTATCCAGACTATTATGAGCCCTGACATCTCCAGCGTGCAAGG
ATCTGTCAGTCAGGTCCGCGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTAGATACCGTTCTTTATTTTGAGGGC
GAGCGGCAACACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCACAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACTCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGCGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTTGCGGTCGCAG
TTGCCCTCGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCAAAAAA
TTCCCTGACAGGTATCAAGGTACCCAAGGAAATCACGGTTGTCGGCGTGACCACCATTGGCGAAGTCTTACAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.708

99.341

0.901
  radA Streptococcus pneumoniae R6

90.708

99.341

0.901
  radA Streptococcus pneumoniae Rx1

90.708

99.341

0.901
  radA Streptococcus pneumoniae TIGR4

90.708

99.341

0.901
  radA Streptococcus mitis SK321

90.487

99.341

0.899
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624