Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   K6974_RS13215 Genome accession   NZ_CP082204
Coordinates   2626033..2626797 (+) Length   254 a.a.
NCBI ID   WP_105121983.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2621033..2631797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS13195 (K6974_13060) - 2621791..2622480 (-) 690 WP_222337422.1 YoaK family protein -
  K6974_RS13200 (K6974_13065) - 2622643..2623845 (-) 1203 WP_392339016.1 IS110 family transposase -
  K6974_RS13205 (K6974_13070) rlmH 2624123..2624602 (-) 480 WP_002941741.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  K6974_RS13210 (K6974_13075) htrA 2624776..2625972 (+) 1197 WP_172034837.1 S1C family serine protease Regulator
  K6974_RS13215 (K6974_13080) spo0J 2626033..2626797 (+) 765 WP_105121983.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28932.19 Da        Isoelectric Point: 9.1678

>NTDB_id=600018 K6974_RS13215 WP_105121983.1 2626033..2626797(+) (spo0J) [Streptococcus suis strain FJSM5]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGQISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNLK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=600018 K6974_RS13215 WP_105121983.1 2626033..2626797(+) (spo0J) [Streptococcus suis strain FJSM5]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCCATTAAGGAAAATGGATTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAAGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACGCATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGACAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAGGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAACTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTAAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.118

100

0.551