Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K6974_RS12205 Genome accession   NZ_CP082204
Coordinates   2438916..2440283 (-) Length   455 a.a.
NCBI ID   WP_029175492.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2433916..2445283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS12195 (K6974_12070) - 2436951..2437709 (-) 759 WP_222336540.1 TIGR00266 family protein -
  K6974_RS12200 (K6974_12075) - 2438036..2438530 (-) 495 WP_172087935.1 carbonic anhydrase -
  K6974_RS12205 (K6974_12080) radA 2438916..2440283 (-) 1368 WP_029175492.1 DNA repair protein RadA Machinery gene
  K6974_RS12210 (K6974_12085) - 2440290..2440823 (-) 534 WP_099806595.1 histidine phosphatase family protein -
  K6974_RS12215 (K6974_12090) - 2440830..2441273 (-) 444 WP_002939955.1 dUTP diphosphatase -
  K6974_RS12220 (K6974_12095) - 2441790..2442656 (-) 867 WP_105104677.1 helix-turn-helix domain-containing protein -
  K6974_RS12225 (K6974_12100) - 2442994..2443563 (+) 570 WP_029175489.1 hypothetical protein -
  K6974_RS12230 (K6974_12105) - 2443594..2443737 (+) 144 WP_153309050.1 hypothetical protein -
  K6974_RS12235 (K6974_12110) - 2443772..2443960 (+) 189 WP_002939946.1 hypothetical protein -
  K6974_RS12240 - 2444105..2444227 (+) 123 WP_002939945.1 hypothetical protein -
  K6974_RS12245 (K6974_12115) - 2444482..2444841 (-) 360 WP_024419247.1 YbaN family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49886.44 Da        Isoelectric Point: 6.1927

>NTDB_id=600014 K6974_RS12205 WP_029175492.1 2438916..2440283(-) (radA) [Streptococcus suis strain FJSM5]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTDMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=600014 K6974_RS12205 WP_029175492.1 2438916..2440283(-) (radA) [Streptococcus suis strain FJSM5]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCTTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTTCCTTTGTCGAGGAAGTGGAGGTTGCGGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCGATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCTCGTACCAAGACCGATATGGAAGAGTTCAAC
CGCGTCCTCGGTGGCGGTGTGGTGCCGGGCAGTTTGGTCCTGATTGGAGGCGATCCAGGGATTGGCAAGTCCACCCTGCT
CCTGCAAGTATCGACCCAACTTTCGACTATTGGCACCGTCCTCTACGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATTGACAGTGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAAATCAAGCCAGATTTCCTGATTATCGACTCCATTCAGACCATTATGAGCCCTGACATCTCCAGTGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTCGGCTCTACCAATGAAATCGGCATTTTTGAGAT
GCAGTCGCAGGGCTTGGTTGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGAGCGACTGGCTCTG
CTATTGTCGTGACCATGGAGGGCACTCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCTAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGAGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCAACTAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAACTAGGCTTTACCAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGTGAAGTCTTGCAGAAAGTGT
TTAAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

AAA domain (AAA_25)

(64-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.372

99.341

0.908
  radA Streptococcus pneumoniae Rx1

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

91.15

99.341

0.905
  radA Streptococcus pneumoniae R6

91.15

99.341

0.905
  radA Streptococcus pneumoniae TIGR4

91.15

99.341

0.905
  radA Streptococcus mitis SK321

90.929

99.341

0.903
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624