Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   K6974_RS10935 Genome accession   NZ_CP082204
Coordinates   2188738..2190528 (-) Length   596 a.a.
NCBI ID   WP_099777035.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2183738..2195528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS10910 (K6974_10800) - 2184059..2184424 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  K6974_RS10915 (K6974_10805) - 2184546..2185448 (-) 903 WP_002942329.1 ABC transporter permease -
  K6974_RS10920 (K6974_10810) opp4B 2185462..2186418 (-) 957 WP_044774484.1 oligopeptide ABC transporter permease -
  K6974_RS10925 (K6974_10815) - 2186420..2187361 (-) 942 WP_012027759.1 ATP-binding cassette domain-containing protein -
  K6974_RS10930 (K6974_10820) - 2187364..2188362 (-) 999 WP_029173858.1 ABC transporter ATP-binding protein -
  K6974_RS10935 (K6974_10825) oppA 2188738..2190528 (-) 1791 WP_099777035.1 oligopeptide ABC transporter substrate-binding protein Regulator
  K6974_RS10940 (K6974_10830) pbp3 2190743..2191984 (+) 1242 WP_222337055.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  K6974_RS10945 (K6974_10835) sufB 2192366..2193781 (-) 1416 WP_222293323.1 Fe-S cluster assembly protein SufB -
  K6974_RS10950 (K6974_10840) sufU 2194023..2194463 (-) 441 WP_222337054.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65634.37 Da        Isoelectric Point: 4.4965

>NTDB_id=600009 K6974_RS10935 WP_099777035.1 2188738..2190528(-) (oppA) [Streptococcus suis strain FJSM5]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPSEVKQDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDRFLN
IVGMEEYVAGTASDISGIKKVDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTSKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNFGKYDESAKKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAKK
LLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPTGLWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=600009 K6974_RS10935 WP_099777035.1 2188738..2190528(-) (oppA) [Streptococcus suis strain FJSM5]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCATTTGTTTCAGCTACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCAATGTTTGGTTACGATGGAGATCGTAAGTTAGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAAAAGGTAAGAAAATCACTGTTAGTTTGACAGGTAAAGATTACAAGTGGTCAGATGGTGAGCCATTTACAA
TCAATGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAGATTCTTGAAC
ATTGTGGGTATGGAAGAGTATGTTGCAGGAACAGCATCAGACATCTCTGGTATTAAGAAAGTTGACGACTACACAGTAGA
ATTGACTGTAAAAGAAATGTCGCCTTCAATGATGTATGCGGGTGGTGATGTCCCAGCTTATATCCAACCAGAACATATCT
ATAAAGATATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACATCTAAACTTGTTGGTATGGGACCTTGGAAA
ATTAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCAGATACTATTGTTTCTGAAATGAAAGCTGGTAACTATGACATCGCAGATATGC
CTGTTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTTCTTTGGACTCAGCTTATGAATACATT
TCATTTAATTTTGGTAAATATGACGAGTCTGCTAAGAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCAATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAACT
CATTGATTATCTCATTCTTCGGCGACATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACAGAAGCGAACGAAGCACTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCAACAGGTTACGATCCAAACCCAACAGGACTTTGGGGTCCAATCGCAGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAATACTAAGTTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATCACAGCC
CTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

93.792

100

0.938