Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   K6974_RS10875 Genome accession   NZ_CP082204
Coordinates   2178184..2178918 (-) Length   244 a.a.
NCBI ID   WP_002942356.1    Uniprot ID   G7SIC8
Organism   Streptococcus suis strain FJSM5     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2173184..2183918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS10850 (K6974_10740) rimP 2173425..2173895 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  K6974_RS10855 (K6974_10745) - 2174213..2175502 (+) 1290 WP_222337543.1 IS4 family transposase -
  K6974_RS10860 (K6974_10750) trmB 2175668..2176306 (-) 639 WP_222337058.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  K6974_RS10865 (K6974_10755) ccrZ 2176303..2177097 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  K6974_RS10870 (K6974_10760) - 2177147..2178187 (-) 1041 WP_222337057.1 ABC transporter permease -
  K6974_RS10875 (K6974_10765) pptA 2178184..2178918 (-) 735 WP_002942356.1 ABC transporter ATP-binding protein Regulator
  K6974_RS10880 (K6974_10770) - 2178981..2179394 (+) 414 WP_029179279.1 HIT family protein -
  K6974_RS10885 (K6974_10775) - 2179396..2179725 (+) 330 WP_029187511.1 hypothetical protein -
  K6974_RS10890 (K6974_10780) - 2180141..2181334 (-) 1194 WP_222337056.1 LCP family protein -
  K6974_RS10895 (K6974_10785) - 2181331..2181858 (-) 528 WP_024376436.1 GNAT family N-acetyltransferase -
  K6974_RS10900 (K6974_10790) tsaE 2181851..2182291 (-) 441 WP_032511687.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26832.10 Da        Isoelectric Point: 4.3606

>NTDB_id=600008 K6974_RS10875 WP_002942356.1 2178184..2178918(-) (pptA) [Streptococcus suis strain FJSM5]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=600008 K6974_RS10875 WP_002942356.1 2178184..2178918(-) (pptA) [Streptococcus suis strain FJSM5]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCAGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAACTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAGGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGTTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCAATCCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTTCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SIC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721