Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   K6974_RS09945 Genome accession   NZ_CP082204
Coordinates   1984400..1986175 (-) Length   591 a.a.
NCBI ID   WP_024375838.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1979400..1991175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS09920 - 1980603..1980791 (+) 189 Protein_1917 helix-turn-helix domain-containing protein -
  K6974_RS09925 (K6974_09815) - 1980792..1981638 (+) 847 Protein_1918 IS630 family transposase -
  K6974_RS09930 (K6974_09820) - 1981799..1982452 (-) 654 WP_099831563.1 phosphatase PAP2 family protein -
  K6974_RS09935 (K6974_09825) - 1982477..1983034 (-) 558 WP_099831564.1 ECF transporter S component -
  K6974_RS09940 (K6974_09830) - 1983480..1984025 (-) 546 WP_024378130.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  K6974_RS09945 (K6974_09835) oppA 1984400..1986175 (-) 1776 WP_024375838.1 oligopeptide ABC transporter substrate-binding protein Regulator
  K6974_RS09950 (K6974_09840) yidD 1986673..1986912 (-) 240 WP_024375837.1 membrane protein insertion efficiency factor YidD -
  K6974_RS09955 (K6974_09845) - 1986912..1987643 (-) 732 WP_024399643.1 pseudouridine synthase -
  K6974_RS09960 (K6974_09850) scpB 1987633..1988202 (-) 570 WP_024415850.1 SMC-Scp complex subunit ScpB -
  K6974_RS09965 (K6974_09855) - 1988186..1988905 (-) 720 WP_024375835.1 segregation/condensation protein A -
  K6974_RS09970 (K6974_09860) xerD 1988905..1989636 (-) 732 WP_024415848.1 site-specific tyrosine recombinase XerD -
  K6974_RS09975 (K6974_09865) cbpB 1989633..1990091 (-) 459 WP_024375833.1 cyclic-di-AMP-binding protein CbpB -
  K6974_RS09980 (K6974_09870) - 1990088..1990615 (-) 528 WP_024415847.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65436.16 Da        Isoelectric Point: 4.2794

>NTDB_id=600005 K6974_RS09945 WP_024375838.1 1984400..1986175(-) (oppA) [Streptococcus suis strain FJSM5]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFKSEVTHEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
GMVDISMFGYDSARTLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVRKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDDASGKNVTDPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYNPEKAKKLLD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTVLLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=600005 K6974_RS09945 WP_024375838.1 1984400..1986175(-) (oppA) [Streptococcus suis strain FJSM5]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAAATCAGAAGTGACACACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAATTATCGCAGACGGCGGTAGACTCAACCTTTGCA
GGCATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTACGTTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGA
TGTAGATGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGTGTTAGGAAGGTTGATGATTATACGGTAGTCCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTATAAGGACTTATCTAATATTACTTTACTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGACCGATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATAACCCTGAAAAGGCTAAAAAACTTCTCGAT
GAGGCAGGATATAAAGACGTAGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCACTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAGCAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TTTATACAGGAAGAACAATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCGACATCATTGTGGGGACCGGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGTACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAAAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCCTTCGAACAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGTAAATCAGGACATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.825

100

0.662