Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   K6974_RS01215 Genome accession   NZ_CP082204
Coordinates   226469..227182 (+) Length   237 a.a.
NCBI ID   WP_029175773.1    Uniprot ID   A0A9X4MVN1
Organism   Streptococcus suis strain FJSM5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 225005..226294 226469..227182 flank 175


Gene organization within MGE regions


Location: 225005..227182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS01210 (K6974_01195) - 225005..226294 (-) 1290 WP_222337543.1 IS4 family transposase -
  K6974_RS01215 (K6974_01200) treR 226469..227182 (+) 714 WP_029175773.1 trehalose operon repressor Regulator

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27265.13 Da        Isoelectric Point: 7.3099

>NTDB_id=599976 K6974_RS01215 WP_029175773.1 226469..227182(+) (treR) [Streptococcus suis strain FJSM5]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDRITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERDLMQIQDDYLVLIKSRVYLGDTRQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=599976 K6974_RS01215 WP_029175773.1 226469..227182(+) (treR) [Streptococcus suis strain FJSM5]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAACAGCTCCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGGGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATAGGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCTATATAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
ACGAGATTTGATGCAGATTCAGGATGATTATCTGGTGTTGATAAAATCCAGGGTCTACTTAGGAGATACGCGACAATTTC
AATACACTGAAAGTAAGCACAAGATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

51.709

98.734

0.511