Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K6972_RS09775 Genome accession   NZ_CP082203
Coordinates   2023652..2025019 (-) Length   455 a.a.
NCBI ID   WP_222813007.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2008737..2026009 2023652..2025019 within 0


Gene organization within MGE regions


Location: 2008737..2026009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS09740 (K6972_09740) - 2008737..2009996 (-) 1260 WP_222812561.1 MFS transporter -
  K6972_RS09745 (K6972_09745) - 2010087..2010746 (-) 660 WP_202848512.1 LiaF transmembrane domain-containing protein -
  K6972_RS09750 (K6972_09750) - 2010751..2011197 (-) 447 WP_024407334.1 LytTR family DNA-binding domain-containing protein -
  K6972_RS10710 - 2011337..2011672 (-) 336 WP_274726117.1 LPXTG cell wall anchor domain-containing protein -
  K6972_RS09755 (K6972_09755) - 2011985..2019610 (-) 7626 Protein_1894 DUF445 family protein -
  K6972_RS10630 - 2019609..2019821 (+) 213 WP_238711102.1 hypothetical protein -
  K6972_RS10770 - 2019854..2019934 (-) 81 Protein_1896 KxYKxGKxW signal peptide domain-containing protein -
  K6972_RS09760 (K6972_09760) - 2020502..2021722 (-) 1221 WP_024384168.1 glycosyltransferase -
  K6972_RS09765 (K6972_09765) - 2022069..2022827 (-) 759 WP_013730631.1 TIGR00266 family protein -
  K6972_RS09770 (K6972_09770) - 2023034..2023528 (-) 495 WP_222812562.1 carbonic anhydrase -
  K6972_RS09775 (K6972_09775) radA 2023652..2025019 (-) 1368 WP_222813007.1 DNA repair protein RadA Machinery gene
  K6972_RS09780 (K6972_09780) - 2025026..2025559 (-) 534 WP_222812563.1 histidine phosphatase family protein -
  K6972_RS09785 (K6972_09785) - 2025566..2026009 (-) 444 WP_002939955.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49857.40 Da        Isoelectric Point: 6.5150

>NTDB_id=599955 K6972_RS09775 WP_222813007.1 2023652..2025019(-) (radA) [Streptococcus suis strain NJ3]
MIITKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPAFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=599955 K6972_RS09775 WP_222813007.1 2023652..2025019(-) (radA) [Streptococcus suis strain NJ3]
ATCATCATCACTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGCTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTAACAGGTG
AGAAGACCCGTCCCATGAAGCTCAATGAAGTTTCCTCCATTCAAGTGGCTCGTACTAAGACCAACATGGAAGAGTTCAAC
CGCGTCCTCGGAGGCGGCGTGGTACCGGGAAGTCTGGTCCTGATTGGAGGCGATCCAGGAATCGGGAAATCCACCCTGCT
TTTACAGGTATCGACCCAACTTTCGACCATTGGTACCGTCCTCTATGTGTCGGGGGAAGAATCTGCCCAGCAGATTAAGT
TGCGGGCGGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACTAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATCAAACCAGCTTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTAACCAATGAACTTATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGCACCCTGGCTGGACCGCGGACCCTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCTAGCGAGGTCTTTCTAGAAGAGCGTCTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCGATCCTTGCAGAAGTGCAGGCCTTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAATCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTTGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCTACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACAACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.708

99.341

0.901
  radA Streptococcus pneumoniae R6

90.708

99.341

0.901
  radA Streptococcus pneumoniae Rx1

90.708

99.341

0.901
  radA Streptococcus pneumoniae TIGR4

90.708

99.341

0.901
  radA Streptococcus mitis SK321

90.487

99.341

0.899
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622