Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   K6972_RS08920 Genome accession   NZ_CP082203
Coordinates   1816993..1818780 (-) Length   595 a.a.
NCBI ID   WP_105136328.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1811993..1823780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS08895 (K6972_08895) - 1812314..1812679 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  K6972_RS08900 (K6972_08900) - 1812801..1813703 (-) 903 WP_029171026.1 ABC transporter permease -
  K6972_RS08905 (K6972_08905) opp4B 1813717..1814673 (-) 957 WP_074391669.1 oligopeptide ABC transporter permease -
  K6972_RS08910 (K6972_08910) - 1814675..1815616 (-) 942 WP_029694475.1 ATP-binding cassette domain-containing protein -
  K6972_RS08915 (K6972_08915) - 1815619..1816617 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  K6972_RS08920 (K6972_08920) oppA 1816993..1818780 (-) 1788 WP_105136328.1 oligopeptide ABC transporter substrate-binding protein Regulator
  K6972_RS08925 (K6972_08925) pbp3 1818993..1820234 (+) 1242 WP_222812527.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  K6972_RS08930 (K6972_08930) sufB 1820473..1821888 (-) 1416 WP_024379508.1 Fe-S cluster assembly protein SufB -
  K6972_RS08935 (K6972_08935) sufU 1822225..1822665 (-) 441 WP_222812528.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65594.28 Da        Isoelectric Point: 4.4031

>NTDB_id=599951 K6972_RS08920 WP_105136328.1 1816993..1818780(-) (oppA) [Streptococcus suis strain NJ3]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPSEVKQDGTAVSDAQLKYAFVSPTTSSGLLIDELTENTTDST
FGGMVDISLFGYDGDRKLDDSGLAKAEFDVEGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMKEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNLGKYDESAEKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYDPEKAKK
LLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYEAVQANDPAID
MYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLEAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVAE

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=599951 K6972_RS08920 WP_105136328.1 1816993..1818780(-) (oppA) [Streptococcus suis strain NJ3]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATATGCGTTTGTATCACCAACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCACTGTTCGGTTACGATGGAGATCGTAAGTTGGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAGAAGGTAAGAAAATCACAGTTAGCTTGACAGGTAAGGACTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGAAAGAATTCGTTGCTGGAACAGCTTCTGACATCTCTGGTCTTAAGAAAATTGATGACTACACAGTGGA
ATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCGGGTGGTGATGTCCCGGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGGACAACGCCAAAAACAAG
TTCATTGAAGATTGACATCGTATCTCCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCAGATATGC
CAGTTGATCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTTGGTTCTTTGGATTCAGCTTATGAATATATC
TCATTCAACCTTGGTAAATATGACGAGTCTGCTGAGAAGAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGTTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGATGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ACGTTGAACTTTACACAGGCCGTACAGTTGAAATCAATACATTCTACGAAGCTGTTCAAGCAAATGATCCTGCTATCGAT
ATGTACGCTGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTACTTGGGGTCCTATCGCTGCCTTCAACATGTC
ACGTTTCGTATCTGATGAAAATACTAAGTTGTTGGAAGCAATTAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCCATTCCAACATTTGAGTCTGAGTCAATTACTGCG
CTTAACAAACGCGTGAAAAACTATGATTCAAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.917

99.664

0.926