Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   K6972_RS08860 Genome accession   NZ_CP082203
Coordinates   1806772..1807506 (-) Length   244 a.a.
NCBI ID   WP_222812524.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801772..1812506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS08830 (K6972_08830) rnpM 1801973..1802269 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  K6972_RS08835 (K6972_08835) nusA 1802286..1803428 (-) 1143 WP_014638606.1 transcription termination factor NusA -
  K6972_RS08840 (K6972_08840) rimP 1803501..1803971 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  K6972_RS08845 (K6972_08845) trmB 1804256..1804894 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  K6972_RS08850 (K6972_08850) ccrZ 1804891..1805685 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  K6972_RS08855 (K6972_08855) - 1805735..1806775 (-) 1041 WP_222812523.1 ABC transporter permease -
  K6972_RS08860 (K6972_08860) pptA 1806772..1807506 (-) 735 WP_222812524.1 ABC transporter ATP-binding protein Regulator
  K6972_RS08865 (K6972_08865) - 1807569..1807982 (+) 414 WP_208572632.1 HIT family protein -
  K6972_RS08870 (K6972_08870) - 1807984..1808286 (+) 303 WP_222759333.1 chemotaxis protein -
  K6972_RS08875 (K6972_08875) - 1808396..1809589 (-) 1194 WP_222812525.1 LCP family protein -
  K6972_RS08880 (K6972_08880) - 1809586..1810113 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  K6972_RS08885 (K6972_08885) tsaE 1810106..1810546 (-) 441 WP_315984687.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  K6972_RS08890 (K6972_08890) - 1810647..1812311 (-) 1665 WP_014638614.1 DAK2 domain-containing protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26890.18 Da        Isoelectric Point: 4.3606

>NTDB_id=599950 K6972_RS08860 WP_222812524.1 1806772..1807506(-) (pptA) [Streptococcus suis strain NJ3]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMVYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLITLLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=599950 K6972_RS08860 WP_222812524.1 1806772..1807506(-) (pptA) [Streptococcus suis strain NJ3]
ATGTTAGAAGTAAAAAATGTAACTGGAGGGTATGTCAATATCCCGGTTTTGAAAGATGTATCTTTTACGGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGTTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCTTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGTTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGTCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTATTTCGCTTGGATGAAAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGAGTCTGCTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATTACTCTTTTGGAGGAAGAAAAATCTAAGGGTACTTCCATTCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAACGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

97.951

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

97.951

0.717