Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   K6972_RS08110 Genome accession   NZ_CP082203
Coordinates   1649968..1651743 (-) Length   591 a.a.
NCBI ID   WP_222812473.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644968..1656743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS08085 (K6972_08085) - 1645052..1645474 (+) 423 WP_105179921.1 hypothetical protein -
  K6972_RS08090 (K6972_08090) - 1645464..1647263 (+) 1800 WP_221864842.1 acyltransferase family protein -
  K6972_RS08095 (K6972_08095) - 1647487..1648140 (-) 654 WP_044674249.1 phosphatase PAP2 family protein -
  K6972_RS08100 (K6972_08100) - 1648165..1648722 (-) 558 WP_029186164.1 ECF transporter S component -
  K6972_RS08105 (K6972_08105) - 1649046..1649591 (-) 546 WP_002939238.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  K6972_RS08110 (K6972_08110) oppA 1649968..1651743 (-) 1776 WP_222812473.1 oligopeptide ABC transporter substrate-binding protein Regulator
  K6972_RS08115 (K6972_08115) yidD 1652392..1652631 (-) 240 WP_024406654.1 membrane protein insertion efficiency factor YidD -
  K6972_RS08120 (K6972_08120) - 1652631..1653362 (-) 732 WP_012027615.1 pseudouridine synthase -
  K6972_RS08125 (K6972_08125) scpB 1653352..1653921 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  K6972_RS08130 (K6972_08130) - 1653905..1654624 (-) 720 WP_222812474.1 segregation/condensation protein A -
  K6972_RS08135 (K6972_08135) xerD 1654624..1655355 (-) 732 WP_222812475.1 site-specific tyrosine recombinase XerD -
  K6972_RS08140 (K6972_08140) cbpB 1655352..1655810 (-) 459 WP_012027618.1 cyclic-di-AMP-binding protein CbpB -
  K6972_RS08145 (K6972_08145) - 1655807..1656334 (-) 528 WP_024398407.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65471.20 Da        Isoelectric Point: 4.2796

>NTDB_id=599947 K6972_RS08110 WP_222812473.1 1649968..1651743(-) (oppA) [Streptococcus suis strain NJ3]
MKRMKNIALTGIGLLSIAALTACQTKEKTSDVALTFNSEVTNEGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDSARKLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNIV
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDETSGKNVTNPNAKMNNIKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKILD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVKLYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGITAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=599947 K6972_RS08110 WP_222812473.1 1649968..1651743(-) (oppA) [Streptococcus suis strain NJ3]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAGCGTTAACAGCTTGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAACTCAGAAGTGACAAACGAAGGACAAACTATCGAAGGCGGGAGTCTCAAAT
ATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTTAATTGATGAGTTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTAAGTTAGACGATTCAGGTCTTGCTAAGGCAGAGTTTGA
TGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGACACTACCTATACAAATATCGTT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGCGTTAAGAAGGTTGATGACTATACGGTAGTTCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGGGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ACATTGCAGTTAAAGATTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGACAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTACAAGGACTTATCAAATATTACTTTGCTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGAGACCAGCGGTAAAAATGTGACCAATCCTAATGCTAAGATGAATAATATTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAAAAAATTCTCGAT
GAGGCAGGATATAAAGACGTTGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCACTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAACAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGAAAC
TCTATACAGGAAGAACCATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTT
GCTGCTTGGATTGCCGGTCTAGATCCAGACCCGACATCATTGTGGGGACCTGAAGCGATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCATTCGAACAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGCGTTAAATATTACGACGTTTATATCGGTTCGGACAGCAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTACAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.152

100

0.655