Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   K6972_RS01385 Genome accession   NZ_CP082203
Coordinates   241959..242672 (+) Length   237 a.a.
NCBI ID   WP_044683691.1    Uniprot ID   A0A0Z8J6C0
Organism   Streptococcus suis strain NJ3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 236959..247672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS01375 (K6972_01375) treC 238031..239656 (-) 1626 WP_222759669.1 alpha,alpha-phosphotrehalase -
  K6972_RS01380 (K6972_01380) treP 239738..241726 (-) 1989 WP_222812671.1 PTS system trehalose-specific EIIBC component -
  K6972_RS01385 (K6972_01385) treR 241959..242672 (+) 714 WP_044683691.1 trehalose operon repressor Regulator
  K6972_RS01390 (K6972_01390) - 242730..243041 (+) 312 WP_002935948.1 hypothetical protein -
  K6972_RS01395 (K6972_01395) - 243038..243586 (+) 549 WP_002935945.1 CvpA family protein -
  K6972_RS01400 (K6972_01400) - 243927..246260 (+) 2334 WP_222812674.1 endonuclease MutS2 -
  K6972_RS01405 (K6972_01405) - 246284..246937 (+) 654 WP_222759673.1 GNAT family N-acetyltransferase -
  K6972_RS01410 (K6972_01410) trxA 247309..247623 (+) 315 WP_012775426.1 thioredoxin -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27159.01 Da        Isoelectric Point: 6.7418

>NTDB_id=599923 K6972_RS01385 WP_044683691.1 241959..242672(+) (treR) [Streptococcus suis strain NJ3]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTSREERDLMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=599923 K6972_RS01385 WP_044683691.1 241959..242672(+) (treR) [Streptococcus suis strain NJ3]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGGTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCTCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATTTAC
GAATACCTGGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACTAGTCGAGAAGA
GCGCGATCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAGTTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8J6C0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.564

98.734

0.519