Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   K6976_RS10150 Genome accession   NZ_CP082202
Coordinates   2121404..2122771 (-) Length   455 a.a.
NCBI ID   WP_222760184.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2111669..2123761 2121404..2122771 within 0


Gene organization within MGE regions


Location: 2111669..2123761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS10115 (K6976_10115) - 2111669..2112949 (-) 1281 WP_222759442.1 MFS transporter -
  K6976_RS10120 (K6976_10120) - 2113040..2113705 (-) 666 WP_222759444.1 hypothetical protein -
  K6976_RS10125 (K6976_10125) - 2113710..2114156 (-) 447 WP_024407334.1 LytTR family DNA-binding domain-containing protein -
  K6976_RS11090 - 2114296..2114511 (-) 216 WP_313681245.1 LPXTG cell wall anchor domain-containing protein -
  K6976_RS11095 - 2114522..2116198 (+) 1677 WP_315985242.1 hypothetical protein -
  K6976_RS11100 - 2117369..2117581 (+) 213 WP_315985243.1 hypothetical protein -
  K6976_RS11160 - 2117614..2117694 (-) 81 Protein_1968 KxYKxGKxW signal peptide domain-containing protein -
  K6976_RS10135 (K6976_10135) - 2118253..2119473 (-) 1221 WP_222759445.1 glycosyltransferase -
  K6976_RS10140 (K6976_10140) - 2119820..2120578 (-) 759 WP_013730631.1 TIGR00266 family protein -
  K6976_RS10145 (K6976_10145) - 2120786..2121280 (-) 495 WP_014638738.1 carbonic anhydrase -
  K6976_RS10150 (K6976_10150) radA 2121404..2122771 (-) 1368 WP_222760184.1 DNA repair protein RadA Machinery gene
  K6976_RS10155 (K6976_10155) - 2122778..2123311 (-) 534 WP_044674700.1 histidine phosphatase family protein -
  K6976_RS10160 (K6976_10160) - 2123318..2123761 (-) 444 WP_002939955.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49885.41 Da        Isoelectric Point: 6.1921

>NTDB_id=599903 K6976_RS10150 WP_222760184.1 2121404..2122771(-) (radA) [Streptococcus suis strain SS389]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLEEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=599903 K6976_RS10150 WP_222760184.1 2121404..2122771(-) (radA) [Streptococcus suis strain SS389]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAATACCATTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCTCGCACCAAGACCAACATGGAAGAGTTCAAC
CGTGTCCTCGGTGGCGGTGTGGTCCCAGGCAGTCTAGTCCTGATTGGAGGCGATCCAGGAATCGGGAAATCCACCCTGCT
TTTACAGGTATCTACCCAGCTTTCTACTATTGGCACGGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGC
TGCGGGCGGAGCGTCTGGGCGACATCGATAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTACAAGG
CTCTGTCAGTCAGGTCCGTGAAGTAACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GGCACATGACCAAGGAAGGCACCCTGGCTGGACCGCGGACCCTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCTAGCGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG
CCATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCCCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAATCAGCAGGCGGTGTCAAACTGGAAGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCGACCAACCCACAAGAGTGCTTTATAGGCGAAATTGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCTCTGACCGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTGT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622