Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   K6976_RS09185 Genome accession   NZ_CP082202
Coordinates   1898424..1900211 (-) Length   595 a.a.
NCBI ID   WP_141587504.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1893424..1905211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS09160 (K6976_09160) - 1893745..1894110 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  K6976_RS09165 (K6976_09165) - 1894232..1895134 (-) 903 WP_029171026.1 ABC transporter permease -
  K6976_RS09170 (K6976_09170) opp4B 1895148..1896104 (-) 957 WP_074391669.1 oligopeptide ABC transporter permease -
  K6976_RS09175 (K6976_09175) - 1896106..1897047 (-) 942 WP_029694475.1 ATP-binding cassette domain-containing protein -
  K6976_RS09180 (K6976_09180) - 1897050..1898048 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  K6976_RS09185 (K6976_09185) oppA 1898424..1900211 (-) 1788 WP_141587504.1 oligopeptide ABC transporter substrate-binding protein Regulator
  K6976_RS09190 (K6976_09190) pbp3 1900424..1901665 (+) 1242 WP_024395372.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  K6976_RS09195 (K6976_09195) sufB 1901798..1903213 (-) 1416 WP_024387517.1 Fe-S cluster assembly protein SufB -
  K6976_RS09200 (K6976_09200) sufU 1903477..1903917 (-) 441 WP_222759335.1 Fe-S cluster assembly sulfur transfer protein SufU -
  K6976_RS09205 (K6976_09205) - 1903904..1905127 (-) 1224 WP_222759336.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 65566.28 Da        Isoelectric Point: 4.4345

>NTDB_id=599899 K6976_RS09185 WP_141587504.1 1898424..1900211(-) (oppA) [Streptococcus suis strain SS389]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPSEVKQDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDST
FGGMVDISLFGYDGDRKLDDSGLAKAEFDVESKKITVSLTGKDYKWSDGQPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMKEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNLGKYDESAEKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPAKSLIISFFGDIHDSELEGYSYDPEKAKK
LLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYEAVQANDPAID
MYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVAE

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=599899 K6976_RS09185 WP_141587504.1 1898424..1900211(-) (oppA) [Streptococcus suis strain SS389]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAGT
TGAAATATGCGTTTGTATCAGCAACTACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCACTGTTCGGTTACGATGGAGATCGTAAGTTGGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAGAAAGTAAGAAAATCACAGTTAGCTTGACCGGTAAGGACTACAAGTGGTCAGATGGTCAACCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGAAAGAATTCGTTGCTGGAACAGCTTCTGACATCTCTGGTCTTAAGAAAATTGATGACTACACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCGGGTGGTGATGTCCCAGCTTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAATGAATACTTCTTCAAAGGTACAACACCAAAAACAAG
TTCATTGAAGATTGACATCGTGTCTCCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCAGATATGC
CAGTTGATCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTTGGTTCATTGGATTCAGCTTATGAATATATC
TCATTCAACCTTGGTAAATATGACGAGTCTGCTGAGAAGAACGTCATGGATGAAAATGCTAAGATGAATGATGTAAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAAAT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGTTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGATGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTCGGCTTGA
ACGTTGAACTTTACACAGGCCGTACAGTTGAAATCAATACATTCTACGAAGCTGTTCAAGCAAATGACCCTGCTATCGAT
ATGTACGCCGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTACTTGGGGTCCTATCGCTGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAACACTAAATTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AAAACTACAAGGCATGGCAAAAATATGCTCACGAGCAAGCATTTGCCATTCCAACATTTGAGTCTGAGTCAATTACTGCG
CTTAACAAACGCGTGAAAAACTATGATTCAAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(122-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.411

99.664

0.921