Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   K6976_RS09125 Genome accession   NZ_CP082202
Coordinates   1887909..1888643 (-) Length   244 a.a.
NCBI ID   WP_024406554.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1882909..1893643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS09095 (K6976_09095) rnpM 1883136..1883432 (-) 297 WP_002942375.1 RNase P modulator RnpM -
  K6976_RS09100 (K6976_09100) nusA 1883449..1884591 (-) 1143 WP_014638606.1 transcription termination factor NusA -
  K6976_RS09105 (K6976_09105) rimP 1884665..1885135 (-) 471 WP_002942369.1 ribosome maturation factor RimP -
  K6976_RS09110 (K6976_09110) trmB 1885393..1886031 (-) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  K6976_RS09115 (K6976_09115) ccrZ 1886028..1886822 (-) 795 WP_002942360.1 cell cycle regulator CcrZ -
  K6976_RS09120 (K6976_09120) - 1886872..1887912 (-) 1041 WP_222759329.1 ABC transporter permease -
  K6976_RS09125 (K6976_09125) pptA 1887909..1888643 (-) 735 WP_024406554.1 ABC transporter ATP-binding protein Regulator
  K6976_RS09130 (K6976_09130) - 1888706..1889119 (+) 414 WP_222759331.1 HIT family protein -
  K6976_RS09135 (K6976_09135) - 1889121..1889423 (+) 303 WP_222759333.1 chemotaxis protein -
  K6976_RS09140 (K6976_09140) - 1889827..1891020 (-) 1194 WP_114866808.1 LCP family protein -
  K6976_RS09145 (K6976_09145) - 1891017..1891544 (-) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  K6976_RS09150 (K6976_09150) tsaE 1891537..1891977 (-) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26862.13 Da        Isoelectric Point: 4.3606

>NTDB_id=599898 K6976_RS09125 WP_024406554.1 1887909..1888643(-) (pptA) [Streptococcus suis strain SS389]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGFIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPSLLIVDEPF
LGLDPVAISDLITLLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=599898 K6976_RS09125 WP_024406554.1 1887909..1888643(-) (pptA) [Streptococcus suis strain SS389]
ATGTTAGAAGTAAAAAATGTAACTGGAGGATATGTCAATATCCCGGTTTTGAAAGATGTATCTTTTACCGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGCTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGTTTATCCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAAAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCAAGTCTGCTGATTGTTGATGAGCCTTTT
CTGGGATTAGACCCTGTGGCTATCTCTGACTTGATTACTCTTTTGGAGGAAGAAAAATCTAAGGGTACTTCCATTCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGTCAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAACGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

97.951

0.738
  pptA Streptococcus thermophilus LMD-9

73.64

97.951

0.721