Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   K6976_RS08465 Genome accession   NZ_CP082202
Coordinates   1752459..1754234 (-) Length   591 a.a.
NCBI ID   WP_222759262.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1747459..1759234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS08440 (K6976_08440) - 1747574..1747996 (+) 423 WP_015647244.1 hypothetical protein -
  K6976_RS08445 (K6976_08445) - 1747986..1749785 (+) 1800 WP_205026072.1 acyltransferase family protein -
  K6976_RS08450 (K6976_08450) - 1749978..1750631 (-) 654 WP_029177621.1 phosphatase PAP2 family protein -
  K6976_RS08455 (K6976_08455) - 1750656..1751213 (-) 558 WP_063077036.1 ECF transporter S component -
  K6976_RS08460 (K6976_08460) - 1751538..1752083 (-) 546 WP_024384581.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  K6976_RS08465 (K6976_08465) oppA 1752459..1754234 (-) 1776 WP_222759262.1 oligopeptide ABC transporter substrate-binding protein Regulator
  K6976_RS08470 (K6976_08470) yidD 1754881..1755120 (-) 240 WP_024406654.1 membrane protein insertion efficiency factor YidD -
  K6976_RS08475 (K6976_08475) - 1755120..1755851 (-) 732 WP_222759263.1 pseudouridine synthase -
  K6976_RS08480 (K6976_08480) scpB 1755841..1756410 (-) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  K6976_RS08485 (K6976_08485) - 1756394..1757113 (-) 720 WP_222759265.1 segregation/condensation protein A -
  K6976_RS08490 (K6976_08490) xerD 1757113..1757844 (-) 732 WP_222759267.1 site-specific tyrosine recombinase XerD -
  K6976_RS08495 (K6976_08495) cbpB 1757841..1758299 (-) 459 WP_012027618.1 cyclic-di-AMP-binding protein CbpB -
  K6976_RS08500 (K6976_08500) - 1758296..1758823 (-) 528 WP_222759269.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65508.27 Da        Isoelectric Point: 4.3011

>NTDB_id=599895 K6976_RS08465 WP_222759262.1 1752459..1754234(-) (oppA) [Streptococcus suis strain SS389]
MKRMKNIALTGIGLLSIATLTACQTKEKTSDVALTFKSEVTHQGQTIEGGSLKYALVASAPSTGILIDELSQTAVDSTFA
DMVDISMFGYDSARKLDDSGLAKAEFDVDAKTVTVSLTGKDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNII
GFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMMYAGGGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVK
EIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAEMRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFN
LGKYDETSGKNVTNPNAKMNNVKLRQAMGYALDNAVIGEKLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKILD
EAGYKDVDGDGMREDADGKPLTISVAAQKSTETQETMVQQYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYL
AAWIAGLDPDPTSLWGPEAMYNYTRFVSDENTALLNKITSAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNK
RVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=599895 K6976_RS08465 WP_222759262.1 1752459..1754234(-) (oppA) [Streptococcus suis strain SS389]
ATGAAAAGAATGAAAAACATCGCTTTAACTGGTATCGGTCTGCTTTCTATTGCAACGTTAACAGCATGTCAAACTAAAGA
AAAGACGAGCGATGTTGCTCTGACATTTAAATCAGAAGTGACACACCAAGGACAAACTATTGAAGGCGGAAGTCTTAAAT
ATGCCTTGGTAGCTTCGGCACCGTCGACCGGTATCTTAATTGATGAATTATCGCAAACGGCGGTAGACTCAACCTTTGCA
GACATGGTTGATATTTCTATGTTTGGATATGATTCAGCTCGTAAGTTAGACGATTCAGGTCTTGCTAAGGCAGAGTTTGA
TGTAGATGCAAAGACAGTTACCGTTAGTTTGACAGGCAAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATCGATG
ATTATATTTTCACAATCGAACAACTAGCTAGTCCAGACTATACAGGGGTTCGTGCAGACACTACCTATACAAATATCATT
GGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAATTTCAGGCGTTAAGAAGGTTGATGACTATACGGTAGTTCTCTC
AGTGAAAGACATGTCTCCATCCATGATGTATGCTGGTGGGGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAG
ATATTGCAGTCAAAGACTGGGAATCAAGTGAGTATTCTCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAG
GAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAAATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAG
GATTGATATTGTTTCACCAGATACGATTGTTGCAGAAATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACC
AGTACGAATCTTACAAGGACTTATCAAATATTACTTTGCTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTCAAT
CTTGGTAAGTACGATGAGACCAGCGGTAAAAATGTGACCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGC
AATGGGATATGCGTTGGACAATGCGGTGATTGGAGAGAAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTA
TCTCTTTCTTTGGAGATGTTCACGATTCAGAACTAGCTGGCTATAGTTATGATCCTGAAAAGGCTAAAAAAATTCTCGAT
GAGGCAGGATATAAAGACGTTGATGGAGACGGTATGCGTGAAGATGCTGATGGAAAACCACTTACCATCAGTGTTGCAGC
ACAGAAATCAACCGAAACGCAAGAAACCATGGTACAACAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAAC
TCTATACAGGAAGAACCATTGAGTACAATACTTTCTATGAATCAATTGCTGCCAATGATGAGGGGATTGACGTCTATCTT
GCTGCTTGGATTGCCGGCCTAGATCCAGACCCAACATCATTGTGGGGACCTGAAGCTATGTACAACTATACTCGCTTCGT
TTCAGATGAAAACACAGCACTTTTAAATAAAATTACCTCTGCTGAGTCATTTGACGAACAGAAAAATATTGAAAACTACA
AAGCTTGGCAAGAATATGCATTCGAACAAGCCTTTGCAATTCCAACCTTTGAACGTGAAAGTATTACTGCCGTTAACAAA
CGTGTTAAATATTACGACGTTTATATTGGTTCGGACAGCAAATCAGGCCATGAAAATCTTGAGTTGACTGCGGAAAAAGG
GATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(100-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

65.488

100

0.658