Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   K6J60_RS03145 Genome accession   NZ_AP018778
Coordinates   616328..616834 (+) Length   168 a.a.
NCBI ID   WP_005656467.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-7 isolate 15H01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 611328..621834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J60_RS03125 (CHBNIII7_05890) - 611437..611766 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  K6J60_RS03130 (CHBNIII7_05900) - 611919..612764 (-) 846 WP_221267424.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J60_RS03135 (CHBNIII7_05910) - 612837..615431 (-) 2595 WP_221267425.1 penicillin-binding protein 1A -
  K6J60_RS03140 (CHBNIII7_05920) comA 615530..616327 (+) 798 WP_042601084.1 pilus assembly protein PilM Machinery gene
  K6J60_RS03145 (CHBNIII7_05930) comB 616328..616834 (+) 507 WP_005656467.1 competence protein ComB Machinery gene
  K6J60_RS03150 (CHBNIII7_05940) comC 616831..617352 (+) 522 WP_005662592.1 competence protein ComC Machinery gene
  K6J60_RS03155 (CHBNIII7_05950) comD 617349..617762 (+) 414 WP_005662593.1 pilus assembly protein PilP Machinery gene
  K6J60_RS03160 (CHBNIII7_05960) comE 617772..619109 (+) 1338 WP_005662594.1 type IV pilus secretin PilQ family protein Machinery gene
  K6J60_RS03165 (CHBNIII7_05970) - 619122..619808 (+) 687 WP_118801578.1 ComF family protein -
  K6J60_RS03170 (CHBNIII7_05980) nfuA 619884..620480 (+) 597 WP_105896093.1 Fe-S biogenesis protein NfuA -
  K6J60_RS03175 (CHBNIII7_05990) nudC 620548..621342 (+) 795 WP_221267426.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19752.67 Da        Isoelectric Point: 9.4939

>NTDB_id=59975 K6J60_RS03145 WP_005656467.1 616328..616834(+) (comB) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMRIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=59975 K6J60_RS03145 WP_005656467.1 616328..616834(+) (comB) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGCCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCGAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

98.81

100

0.988
  comB Haemophilus influenzae Rd KW20

98.81

100

0.988