Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NC853_RS05530 Genome accession   NZ_CP098468
Coordinates   1062206..1062730 (-) Length   174 a.a.
NCBI ID   WP_003695064.1    Uniprot ID   Q5F7Y0
Organism   Neisseria gonorrhoeae strain 10328     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1057206..1067730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC853_RS05515 (NC853_05455) recP/tkt 1057334..1059313 (+) 1980 WP_003688227.1 transketolase Machinery gene
  NC853_RS05520 (NC853_05460) fumC 1059457..1060845 (+) 1389 WP_003691001.1 class II fumarate hydratase -
  NC853_RS05525 (NC853_05465) - 1060910..1061833 (-) 924 WP_003699810.1 DMT family transporter -
  NC853_RS05530 (NC853_05470) ssb 1062206..1062730 (-) 525 WP_003695064.1 single-stranded DNA-binding protein Machinery gene
  NC853_RS05535 (NC853_05475) - 1062734..1064116 (-) 1383 WP_003688217.1 MFS transporter -
  NC853_RS05540 (NC853_05480) - 1064228..1064851 (-) 624 WP_003688215.1 lytic transglycosylase domain-containing protein -
  NC853_RS05545 (NC853_05485) - 1065353..1065619 (-) 267 Protein_1083 transposase -
  NC853_RS05550 (NC853_05490) - 1065656..1066149 (-) 494 Protein_1084 REP-associated tyrosine transposase -
  NC853_RS05555 (NC853_05495) - 1066327..1066500 (-) 174 WP_167550559.1 hypothetical protein -
  NC853_RS05560 (NC853_05500) - 1066514..1067317 (-) 804 WP_229931630.1 opacity family porin -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19448.66 Da        Isoelectric Point: 5.8313

>NTDB_id=599680 NC853_RS05530 WP_003695064.1 1062206..1062730(-) (ssb) [Neisseria gonorrhoeae strain 10328]
MSLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRNGQRVERTEWHNITMYRKLAEIAGQYLKKGGLVYLEGRI
QSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYDEGYGQSQEAYQRPAQQSRQPAPDAPSHPQEAPAAPRRQPVP
AAAPVEDIDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=599680 NC853_RS05530 WP_003695064.1 1062206..1062730(-) (ssb) [Neisseria gonorrhoeae strain 10328]
ATGTCATTGAACAAAGTCATCCTTATCGGCCGCCTCGGACGCGATCCCGAAGTGCGCTATATGCCCAACGGCGAGGCAGT
GTGTAATTTCAGCGTCGCCACCAGCGAAACTTGGAACGACCGCAACGGCCAGCGCGTAGAGCGCACCGAATGGCACAACA
TCACGATGTACCGCAAACTGGCGGAAATTGCCGGGCAATACCTCAAAAAAGGCGGGCTGGTTTATCTGGAAGGCAGAATC
CAAAGCCGCAAATACCAAGGCAAAGACGGCATCGAACGCACCGCTTACGATATTGTCGCCAATGAAATGAAAATGTTGGG
CGGGCGCAATGAAAACAGCGGCGGCGCGCCTTACGATGAAGGTTACGGTCAGAGTCAGGAGGCTTACCAACGCCCCGCTC
AGCAAAGCCGGCAGCCCGCTCCCGACGCGCCGTCCCATCCCCAAGAAGCACCCGCCGCGCCGCGCCGCCAACCCGTGCCG
GCCGCCGCCCCGGTCGAGGACATTGACGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F7Y0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

100

100

1
  ssb Neisseria meningitidis MC58

98.851

100

0.989
  ssb Vibrio cholerae strain A1552

47.778

100

0.494
  ssb Glaesserella parasuis strain SC1401

44.505

100

0.466