Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6J60_RS02130 Genome accession   NZ_AP018778
Coordinates   419653..420306 (-) Length   217 a.a.
NCBI ID   WP_118807597.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-7 isolate 15H01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 414653..425306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J60_RS02130 (CHBNIII7_03910) sxy/tfoX 419653..420306 (-) 654 WP_118807597.1 DNA transformation protein TfoX Regulator
  K6J60_RS02135 (CHBNIII7_03920) recA 420679..421743 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  K6J60_RS02140 (CHBNIII7_03930) recX 421823..422281 (+) 459 WP_221267396.1 recombination regulator RecX -
  K6J60_RS02145 crcB 422278..422664 (-) 387 WP_005665585.1 fluoride efflux transporter CrcB -
  K6J60_RS02150 (CHBNIII7_03950) - 422664..423482 (-) 819 WP_118807596.1 Cof-type HAD-IIB family hydrolase -
  K6J60_RS02155 (CHBNIII7_03960) - 423885..424889 (+) 1005 WP_221267397.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=59967 K6J60_RS02130 WP_118807597.1 419653..420306(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MNIKDEHIDSVCSLLDRLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=59967 K6J60_RS02130 WP_118807597.1 419653..420306(-) (sxy/tfoX) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCTTTGTTAGATCGGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCCATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAGCGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAACGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(15-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991

Multiple sequence alignment