Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NC852_RS11915 Genome accession   NZ_CP098466
Coordinates   1957520..1957645 (-) Length   41 a.a.
NCBI ID   WP_318152426.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10720     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1952520..1962645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC852_RS10235 (NC852_10155) - 1953368..1953652 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  NC852_RS10240 (NC852_10160) pilC 1954560..1957520 (-) 2961 WP_318152425.1 PilC family type IV pilus tip adhesin Machinery gene
  NC852_RS11915 pilC 1957520..1957645 (-) 126 WP_318152426.1 hypothetical protein Machinery gene
  NC852_RS10245 (NC852_10165) - 1958332..1958595 (+) 264 WP_229433460.1 hypothetical protein -
  NC852_RS10250 (NC852_10170) gnd 1958675..1960123 (+) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  NC852_RS10255 (NC852_10175) waaA 1960186..1961457 (+) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  NC852_RS10260 (NC852_10180) - 1961498..1961947 (+) 450 WP_003688065.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 41 a.a.        Molecular weight: 4826.76 Da        Isoelectric Point: 12.9831

>NTDB_id=599641 NC852_RS11915 WP_318152426.1 1957520..1957645(-) (pilC) [Neisseria gonorrhoeae strain 10720]
MNKTLKRQVFRHTALYAAILMFSHTGGRGGRRRRKRINTLL

Nucleotide


Download         Length: 126 bp        

>NTDB_id=599641 NC852_RS11915 WP_318152426.1 1957520..1957645(-) (pilC) [Neisseria gonorrhoeae strain 10720]
ATGAATAAAACTTTGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GCGGGGGGGCAGGCGCAGGCGCAAACGTATAAATACGCTATTGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

93.333

73.171

0.683