Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   K6975_RS07665 Genome accession   NZ_CP082197
Coordinates   1560122..1561171 (-) Length   349 a.a.
NCBI ID   WP_012775295.1    Uniprot ID   A0A2K1T047
Organism   Streptococcus suis strain Transconjugant cSS389     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1555122..1566171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6975_RS07645 (K6975_07645) nadE 1555528..1556352 (+) 825 WP_004194617.1 ammonia-dependent NAD(+) synthetase -
  K6975_RS07650 (K6975_07650) - 1557648..1558175 (-) 528 WP_012027591.1 VanZ family protein -
  K6975_RS07655 (K6975_07655) rlmN 1558172..1559284 (-) 1113 WP_012028433.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  K6975_RS07660 (K6975_07660) - 1559293..1559934 (-) 642 WP_012027595.1 YutD-like domain-containing protein -
  K6975_RS07665 (K6975_07665) sepM 1560122..1561171 (-) 1050 WP_012775295.1 SepM family pheromone-processing serine protease Regulator
  K6975_RS07670 (K6975_07670) coaD 1561158..1561646 (-) 489 WP_012027597.1 pantetheine-phosphate adenylyltransferase -
  K6975_RS07675 (K6975_07675) rsmD 1561636..1562175 (-) 540 WP_009910569.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K6975_RS07680 (K6975_07680) - 1562483..1563205 (-) 723 WP_012027598.1 lipoprotein -
  K6975_RS07685 (K6975_07685) - 1563262..1563648 (-) 387 WP_004194735.1 rhodanese-like domain-containing protein -
  K6975_RS07690 (K6975_07690) - 1563648..1563866 (-) 219 WP_004194736.1 YqgQ family protein -
  K6975_RS07695 (K6975_07695) - 1564174..1564776 (-) 603 WP_012027601.1 response regulator transcription factor -
  K6975_RS07700 (K6975_07700) - 1564773..1565867 (-) 1095 WP_012027602.1 sensor histidine kinase -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 37761.83 Da        Isoelectric Point: 4.6112

>NTDB_id=599634 K6975_RS07665 WP_012775295.1 1560122..1561171(-) (sepM) [Streptococcus suis strain Transconjugant cSS389]
MKKNRKLTLIASIVLGTLLIWFAVFVRLPYYLESPGGAADIRQVLTVNNQIDQEDGSYNFTYVSVQQATALQLFAAQFDP
YTTVRSSEEMTGGADNEEYFRIARFYMETSQNMAKYQGLTLAGKEVNLDFFGVYVLALTDDSTFKKVLNIADTVVSINGK
TFESSPDLIKYVSGLEVGSDVTVGYISAGQEKSADGKIIKLSNGKNGIGITLVDHTEVQSSIPIDFQTGDIGGPSAGLMF
TLAIYTQLAEPDLRDGRIIAGTGTIEQDGKVGDIGGADKKVISAAKSGASIFFVPNNPVDVEVLKKNPKAKTNYEEAKEA
AEKAGLDIEVVPVKTVQEAIDYLKKTKGE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=599634 K6975_RS07665 WP_012775295.1 1560122..1561171(-) (sepM) [Streptococcus suis strain Transconjugant cSS389]
ATGAAGAAAAATAGGAAGTTAACCTTAATTGCATCTATTGTTTTAGGAACTCTTTTGATTTGGTTTGCCGTTTTTGTTCG
TCTGCCTTATTATCTGGAAAGTCCAGGTGGAGCTGCCGATATTCGTCAGGTACTAACGGTGAACAATCAAATAGACCAAG
AGGATGGCTCTTACAACTTCACCTATGTATCAGTCCAACAGGCTACAGCTTTACAACTATTCGCTGCTCAGTTTGATCCC
TATACGACAGTTCGTTCCTCTGAAGAGATGACAGGAGGGGCCGACAATGAGGAGTATTTCCGTATAGCACGGTTTTACAT
GGAGACATCGCAAAATATGGCGAAGTACCAAGGTTTGACCTTGGCAGGAAAAGAAGTCAATCTTGATTTCTTTGGTGTCT
ATGTGCTTGCCTTGACGGATGATTCAACCTTTAAAAAAGTTCTTAATATTGCCGACACTGTTGTGAGTATCAATGGAAAA
ACATTTGAGTCTTCTCCTGATTTGATTAAATATGTGAGTGGCTTGGAGGTTGGAAGTGATGTAACAGTTGGTTATATTAG
CGCTGGTCAGGAAAAATCTGCGGACGGTAAGATTATCAAATTGTCTAATGGCAAAAACGGGATAGGTATCACTCTCGTAG
ATCATACAGAGGTTCAAAGTTCGATTCCGATTGATTTCCAAACAGGAGATATTGGTGGTCCAAGTGCTGGTCTGATGTTT
ACACTTGCCATCTATACTCAACTCGCAGAGCCTGACTTACGTGATGGTCGGATTATTGCTGGTACGGGGACTATCGAGCA
GGATGGAAAAGTAGGTGACATTGGTGGGGCTGATAAGAAGGTCATTTCGGCAGCTAAGTCTGGTGCAAGTATCTTTTTTG
TACCAAACAATCCAGTTGATGTAGAAGTTTTGAAGAAAAATCCAAAGGCTAAAACGAACTATGAAGAAGCTAAGGAAGCA
GCCGAGAAAGCAGGTCTAGATATTGAGGTAGTTCCTGTGAAAACTGTTCAAGAGGCTATTGATTATTTGAAGAAAACAAA
GGGCGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2K1T047

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.807

99.427

0.605