Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC851_RS11095 Genome accession   NZ_CP098464
Coordinates   2104633..2104776 (-) Length   47 a.a.
NCBI ID   WP_012503975.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10269     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2099633..2109776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC851_RS11070 (NC851_10990) pilA 2100974..2102227 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NC851_RS11075 (NC851_10995) - 2102305..2102478 (-) 174 WP_167550559.1 hypothetical protein -
  NC851_RS11080 (NC851_11000) - 2102492..2103336 (-) 845 Protein_2135 opacity family porin -
  NC851_RS12080 pilE 2103759..2103923 (-) 165 WP_003699316.1 hypothetical protein Machinery gene
  NC851_RS11090 (NC851_11005) pilE 2103896..2104264 (-) 369 WP_267736600.1 pilin Machinery gene
  NC851_RS11095 (NC851_11010) pilE 2104633..2104776 (-) 144 WP_012503975.1 hypothetical protein Machinery gene
  NC851_RS11105 (NC851_11020) - 2105079..2105483 (-) 405 Protein_2139 pilin -
  NC851_RS11110 (NC851_11025) - 2106019..2106435 (-) 417 Protein_2140 pilin -
  NC851_RS11115 (NC851_11030) lpxC 2106535..2107458 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC851_RS11945 - 2107950..2108672 (-) 723 WP_374110874.1 pilin -
  NC851_RS11135 (NC851_11050) pilE 2108596..2108913 (-) 318 WP_003697861.1 pilin Machinery gene
  NC851_RS11140 (NC851_11055) - 2109286..2109417 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5048.57 Da        Isoelectric Point: 7.2429

>NTDB_id=599561 NC851_RS11095 WP_012503975.1 2104633..2104776(-) (pilE) [Neisseria gonorrhoeae strain 10269]
MTGFNDAAGNEKIDTKHLPSTCRDKSSAVCTKHHAPISNAFQENGAF

Nucleotide


Download         Length: 144 bp        

>NTDB_id=599561 NC851_RS11095 WP_012503975.1 2104633..2104776(-) (pilE) [Neisseria gonorrhoeae strain 10269]
ATGACGGGATTTAATGATGCCGCCGGCAACGAAAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATC
TGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAACGGAGCTTTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70

63.83

0.447