Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6028_RS16785 Genome accession   NZ_CP082168
Coordinates   3549321..3549944 (-) Length   207 a.a.
NCBI ID   WP_032688494.1    Uniprot ID   A0A2X2DYW5
Organism   Raoultella planticola strain SCLZS62     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3544321..3554944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6028_RS16770 (K6028_16770) helD 3544557..3546611 (-) 2055 WP_133959407.1 DNA helicase IV -
  K6028_RS16775 (K6028_16775) - 3546734..3547180 (+) 447 WP_004860167.1 YccF domain-containing protein -
  K6028_RS16780 (K6028_16780) yccS 3547198..3549333 (+) 2136 WP_222826018.1 YccS family putative transporter -
  K6028_RS16785 (K6028_16785) sxy/tfoX 3549321..3549944 (-) 624 WP_032688494.1 TfoX/Sxy family DNA transformation protein Regulator
  K6028_RS16790 (K6028_16790) sulA 3550405..3550914 (+) 510 WP_032688495.1 SOS-induced cell division inhibitor SulA -
  K6028_RS16795 (K6028_16795) ompA 3551267..3552337 (+) 1071 WP_032688496.1 porin OmpA -
  K6028_RS16800 (K6028_16800) matP 3552443..3552895 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  K6028_RS16805 (K6028_16805) - 3553081..3554838 (+) 1758 WP_032688497.1 AAA family ATPase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23308.02 Da        Isoelectric Point: 9.7117

>NTDB_id=599561 K6028_RS16785 WP_032688494.1 3549321..3549944(-) (sxy/tfoX) [Raoultella planticola strain SCLZS62]
MKKMSSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKRLQHASGRLKDLPNISFHMELLLINAGVSDEKMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWAGSQHKNIDLYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=599561 K6028_RS16785 WP_032688494.1 3549321..3549944(-) (sxy/tfoX) [Raoultella planticola strain SCLZS62]
ATGAAGAAAATGTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
CTTTGGCGGCTATAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTCGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCCACTCCACTCTTGACGATGCGGAAAAATGGTCGCCCGGTCTTACTGAAA
TATTATCAGGTTGACGAGACCCTCTGGGGGGATAGCAAAACGCTTTTCAATCTATCGGCGTCCTCATTACAAAGTGCACG
CAATGAAAAGCGTCTACAGCATGCGTCCGGAAGATTAAAAGATCTCCCGAATATCAGTTTTCATATGGAGCTGCTGTTGA
TTAACGCAGGCGTGAGTGATGAAAAAATGCTCCGTCAGTTTGGTGCGGAGAAAGTCTGGTTGAAATTGCGGGAATCAAAC
AAAGCACTTACGTTGAATGTTCTCTATGCGCTGGAAGGGGCTATTGCCGGGGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTATGGGCCGGCAGCCAGCACAAAAATATCGATCTTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X2DYW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.284

95.169

0.498