Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   L897_RS09755 Genome accession   NC_021807
Coordinates   54398..54496 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes HSC5     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49398..59496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L897_RS00315 (L897_00325) - 50264..51604 (+) 1341 WP_002987721.1 hypothetical protein -
  L897_RS00320 (L897_00330) purB 51973..53265 (+) 1293 WP_002986683.1 adenylosuccinate lyase -
  L897_RS00325 (L897_00335) comR 53396..54307 (+) 912 WP_014635220.1 XRE family transcriptional regulator Regulator
  L897_RS09755 (L897_00340) comS 54398..54496 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  L897_RS00330 (L897_00345) ruvB 54527..55525 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  L897_RS00335 (L897_00350) - 55663..56100 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  L897_RS00340 (L897_00355) - 56123..56524 (+) 402 WP_012560369.1 MORN repeat-containing protein -
  L897_RS00345 (L897_00360) - 56521..58296 (+) 1776 WP_002994672.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=59956 L897_RS09755 WP_020833188.1 54398..54496(+) (comS) [Streptococcus pyogenes HSC5]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=59956 L897_RS09755 WP_020833188.1 54398..54496(+) (comS) [Streptococcus pyogenes HSC5]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437

Multiple sequence alignment