Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   ABWED_RS14115 Genome accession   NZ_CP082143
Coordinates   2923001..2923327 (-) Length   108 a.a.
NCBI ID   WP_026055760.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED23-35     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2918001..2928327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWED_RS14095 (ABWED_2921) - 2918196..2918855 (-) 660 WP_004278623.1 FHA domain-containing protein -
  ABWED_RS14100 (ABWED_2922) gspD 2918918..2921182 (-) 2265 WP_004278624.1 type II secretion system secretin GspD -
  ABWED_RS14105 (ABWED_2923) - 2921221..2922075 (-) 855 WP_004647311.1 type II secretion system protein N -
  ABWED_RS14110 (ABWED_2924) gspN 2922075..2922818 (-) 744 WP_004647310.1 type II secretion system protein N -
  ABWED_RS14115 (ABWED_2925) hns 2923001..2923327 (-) 327 WP_026055760.1 H-NS family nucleoid-associated regulatory protein Regulator
  ABWED_RS14120 (ABWED_2926) - 2923469..2923897 (-) 429 WP_004278628.1 thioesterase family protein -
  ABWED_RS14125 (ABWED_2927) - 2923906..2925099 (-) 1194 WP_004278629.1 hypothetical protein -
  ABWED_RS14130 (ABWED_2928) - 2925106..2925945 (-) 840 WP_004647307.1 hypothetical protein -
  ABWED_RS14135 (ABWED_2929) - 2925942..2926721 (-) 780 WP_004278631.1 uroporphyrinogen-III synthase -
  ABWED_RS14140 (ABWED_2930) hemC 2926721..2927644 (-) 924 WP_004647306.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12318.07 Da        Isoelectric Point: 7.0196

>NTDB_id=599500 ABWED_RS14115 WP_026055760.1 2923001..2923327(-) (hns) [Acinetobacter lwoffii strain ED23-35]
MMPDITHLSVEELKRLQAEAESLIASKKDQEIEDAYQQILAVAEKVGMTVEQLLEFGASKRKKSSRKSVEPRYRSKSNPD
DTWTGRGKQPRWLVAELEKGAKLDDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=599500 ABWED_RS14115 WP_026055760.1 2923001..2923327(-) (hns) [Acinetobacter lwoffii strain ED23-35]
ATTATGCCAGATATTACGCATTTATCAGTAGAAGAGTTAAAACGTTTACAAGCAGAAGCAGAGTCACTGATTGCTTCAAA
AAAAGATCAAGAGATTGAAGATGCTTATCAGCAAATTTTGGCAGTTGCTGAGAAAGTTGGTATGACAGTTGAACAGTTAC
TTGAATTTGGTGCGTCTAAACGTAAGAAATCGTCACGTAAGTCGGTTGAACCGCGTTACCGTAGCAAAAGCAATCCGGAC
GATACCTGGACTGGCCGTGGTAAACAGCCGCGCTGGTTGGTGGCTGAATTGGAAAAAGGCGCAAAGCTGGACGATTTCCT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

78.704

100

0.787