Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   ABWED_RS02525 Genome accession   NZ_CP082143
Coordinates   533054..533911 (+) Length   285 a.a.
NCBI ID   WP_185950186.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED23-35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 528054..538911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWED_RS02500 (ABWED_0519) - 528289..529494 (+) 1206 WP_039902528.1 CsgG/HfaB family protein -
  ABWED_RS02505 (ABWED_0520) - 529579..530253 (+) 675 WP_004281442.1 hypothetical protein -
  ABWED_RS02510 (ABWED_0521) - 530565..531140 (-) 576 WP_005094083.1 xanthine phosphoribosyltransferase -
  ABWED_RS02515 (ABWED_0522) - 531229..531942 (-) 714 WP_374956176.1 DUF3108 domain-containing protein -
  ABWED_RS02520 (ABWED_0523) - 532104..532790 (-) 687 WP_005263717.1 hypothetical protein -
  ABWED_RS02525 (ABWED_0524) tonB2 533054..533911 (+) 858 WP_185950186.1 TonB family protein Machinery gene
  ABWED_RS02530 (ABWED_0525) ybeY 534096..534578 (-) 483 WP_004281435.1 rRNA maturation RNase YbeY -
  ABWED_RS02535 (ABWED_0526) - 534601..535677 (-) 1077 WP_004281434.1 PhoH family protein -
  ABWED_RS02540 (ABWED_0527) miaB 535715..537172 (-) 1458 WP_004281433.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32553.95 Da        Isoelectric Point: 5.8012

>NTDB_id=599480 ABWED_RS02525 WP_185950186.1 533054..533911(+) (tonB2) [Acinetobacter lwoffii strain ED23-35]
MSLVRTWWKDPVFSSAVLAAGILHLIVLTLEFGMPQDLDTSTKEIAASLRQTDEKIEHADFLAQTDQQGSGQFREAHRMS
SDMPSPLMEQQAGEELEKSLDMLQQQQQLSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDVSAAYLEKFREKVEFYGNRYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKASVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=599480 ABWED_RS02525 WP_185950186.1 533054..533911(+) (tonB2) [Acinetobacter lwoffii strain ED23-35]
ATGTCTCTGGTCAGAACTTGGTGGAAAGATCCAGTGTTTAGCAGTGCGGTGCTTGCCGCAGGCATTCTGCATTTGATCGT
GCTGACACTGGAATTTGGTATGCCACAAGATCTGGATACCAGCACCAAAGAAATTGCGGCCAGCTTGCGCCAGACTGATG
AAAAAATTGAGCATGCCGATTTTCTGGCCCAGACAGACCAGCAGGGTTCCGGTCAGTTTAGAGAGGCGCATCGCATGTCG
AGTGATATGCCCTCGCCATTAATGGAACAGCAGGCAGGTGAAGAGCTGGAAAAAAGTCTGGATATGCTGCAACAGCAACA
ACAGCTCAGTTTTGAAGAAAAGGTCCTGATGACCACTTTGAGCTGGCAAAAGCAGGCGGAGGAAAATCAGCGTAAAAAAA
TGCAGGAGCAATTACAAAGCCAGTTTCAGGCCAAAGCGGCCATGGTCGCCAGTCTGGAAGCGCAATATTTACAGCGTCAA
CAAAATTTCAGTCGTCAGCAAAAAATTAAAACTGTAGATGGGATTCAGGCCAAGCAGGATGTTTCGGCCGCCTATCTGGA
AAAGTTCCGCGAGAAAGTGGAATTCTATGGGAACCGTTATTATCCGGAAGCCGCCAAACAACAGAATCTGGCAGGGGAAG
TGCGGCTGATGGTAATCCTGAACCAGAATGGCGGAATTCGTGCCATTCGGCTGATTGACAGTTCGGGACATGCCATGCTG
GACGAAGCAGCCAAAGCTTCCGTGCGTAAGGCAGCCCCATTTGGTGCTTTCGACAGTAAAATGAAAGAAATTTCCGAACT
GCGAGTGATTCGTACCTGGCGTTTTGACCCGGCAGAAGCGGAGTTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.118

97.895

0.716