Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K5P75_RS14220 Genome accession   NZ_CP082120
Coordinates   2918024..2918653 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PC-NDM34     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2913024..2923653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P75_RS14205 (K5P75_14205) helD 2913266..2915320 (-) 2055 WP_001297106.1 DNA helicase IV -
  K5P75_RS14210 (K5P75_14210) yccF 2915443..2915889 (+) 447 WP_001261235.1 YccF domain-containing protein -
  K5P75_RS14215 (K5P75_14215) yccS 2915899..2918061 (+) 2163 WP_000875015.1 YccS family putative transporter -
  K5P75_RS14220 (K5P75_14220) sxy/tfoX 2918024..2918653 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K5P75_RS14225 (K5P75_14225) sulA 2918872..2919381 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  K5P75_RS14230 (K5P75_14230) ompA 2919738..2920790 (+) 1053 WP_000750419.1 porin OmpA -
  K5P75_RS14235 (K5P75_14235) matP 2920866..2921318 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  K5P75_RS14240 (K5P75_14240) ycbZ 2921504..2923264 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=599390 K5P75_RS14220 WP_000839153.1 2918024..2918653(-) (sxy/tfoX) [Escherichia coli strain PC-NDM34]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=599390 K5P75_RS14220 WP_000839153.1 2918024..2918653(-) (sxy/tfoX) [Escherichia coli strain PC-NDM34]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1