Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   K6129_RS05500 Genome accession   NZ_CP082097
Coordinates   1111584..1112213 (+) Length   209 a.a.
NCBI ID   WP_000839137.1    Uniprot ID   -
Organism   Escherichia coli strain MS15052     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1106584..1117213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6129_RS05480 (K6129_05440) ycbZ 1106984..1108744 (-) 1761 WP_000156501.1 Lon protease family protein -
  K6129_RS05485 (K6129_05445) matP 1108930..1109382 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  K6129_RS05490 (K6129_05450) ompA 1109460..1110500 (-) 1041 WP_001350588.1 porin OmpA -
  K6129_RS05495 (K6129_05455) sulA 1110856..1111365 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  K6129_RS05500 (K6129_05460) sxy/tfoX 1111584..1112213 (+) 630 WP_000839137.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  K6129_RS05505 (K6129_05465) yccS 1112176..1114338 (-) 2163 WP_000875041.1 YccS family putative transporter -
  K6129_RS05510 (K6129_05470) yccF 1114348..1114794 (-) 447 WP_001261236.1 YccF domain-containing protein -
  K6129_RS05515 (K6129_05475) helD 1114917..1116971 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24055.99 Da        Isoelectric Point: 9.4081

>NTDB_id=599279 K6129_RS05500 WP_000839137.1 1111584..1112213(+) (sxy/tfoX) [Escherichia coli strain MS15052]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAGLE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=599279 K6129_RS05500 WP_000839137.1 1111584..1112213(+) (sxy/tfoX) [Escherichia coli strain MS15052]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGGACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

98.565

100

0.986