Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NCL52_RS18490 Genome accession   NZ_CP098417
Coordinates   3604432..3605565 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain N2-10     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3599432..3610565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS18450 (NCL52_18450) ywnA 3599569..3599970 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  NCL52_RS18455 (NCL52_18455) ureC 3600103..3601812 (-) 1710 WP_137201075.1 urease subunit alpha -
  NCL52_RS18460 (NCL52_18460) ureB 3601809..3602183 (-) 375 WP_003227726.1 urease subunit beta -
  NCL52_RS18465 (NCL52_18465) ureA 3602180..3602497 (-) 318 WP_003227724.1 urease subunit gamma -
  NCL52_RS18470 (NCL52_18470) - 3602692..3602852 (-) 161 Protein_3586 hypothetical protein -
  NCL52_RS20795 - 3602954..3603022 (-) 69 WP_144486809.1 hypothetical protein -
  NCL52_RS18475 (NCL52_18475) - 3603111..3603323 (-) 213 Protein_3588 urea ABC transporter substrate-binding protein -
  NCL52_RS18480 (NCL52_18480) csbD 3603536..3603724 (-) 189 WP_015251021.1 stress response protein CsbD -
  NCL52_RS18485 (NCL52_18485) - 3603797..3604276 (-) 480 WP_003244390.1 hypothetical protein -
  NCL52_RS18490 (NCL52_18490) rapC 3604432..3605565 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  NCL52_RS18495 (NCL52_18495) moaA 3605757..3606782 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  NCL52_RS18500 (NCL52_18500) fdhD 3606798..3607586 (-) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  NCL52_RS18505 (NCL52_18505) - 3607832..3607993 (-) 162 WP_003227706.1 hypothetical protein -
  NCL52_RS18510 (NCL52_18510) ywmD 3608087..3608761 (-) 675 WP_003243553.1 VWA domain-containing protein -
  NCL52_RS18515 (NCL52_18515) - 3608814..3608954 (-) 141 WP_014478246.1 hypothetical protein -
  NCL52_RS18520 (NCL52_18520) ywmC 3609085..3609768 (-) 684 WP_124072645.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=599268 NCL52_RS18490 WP_003227715.1 3604432..3605565(-) (rapC) [Bacillus subtilis strain N2-10]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=599268 NCL52_RS18490 WP_003227715.1 3604432..3605565(-) (rapC) [Bacillus subtilis strain N2-10]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGTGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424