Detailed information    

insolico Bioinformatically predicted

Overview


Name   comQ   Type   Regulator
Locus tag   NCL52_RS15910 Genome accession   NZ_CP098417
Coordinates   3086212..3087081 (-) Length   289 a.a.
NCBI ID   WP_251107045.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 3081212..3092081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS15875 (NCL52_15875) mrpE 3081385..3081861 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NCL52_RS15880 (NCL52_15880) mrpF 3081861..3082145 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NCL52_RS15885 (NCL52_15885) mnhG 3082129..3082503 (+) 375 WP_128738180.1 monovalent cation/H(+) antiporter subunit G -
  NCL52_RS15890 (NCL52_15890) yuxO 3082542..3082922 (-) 381 WP_071579112.1 hotdog fold thioesterase -
  NCL52_RS15895 (NCL52_15895) comA 3082941..3083585 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NCL52_RS15900 (NCL52_15900) - 3083666..3085978 (-) 2313 Protein_3074 histidine kinase -
  NCL52_RS15905 (NCL52_15905) comX 3085994..3086215 (-) 222 WP_134982027.1 competence pheromone ComX -
  NCL52_RS15910 (NCL52_15910) comQ 3086212..3087081 (-) 870 WP_251107045.1 polyprenyl synthetase family protein Regulator
  NCL52_RS15915 (NCL52_15915) degQ 3087266..3087406 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NCL52_RS15920 (NCL52_15920) - 3087628..3087753 (+) 126 WP_128473219.1 hypothetical protein -
  NCL52_RS15925 (NCL52_15925) - 3087869..3088237 (+) 369 WP_017695529.1 hypothetical protein -
  NCL52_RS15930 (NCL52_15930) pdeH 3088213..3089442 (-) 1230 WP_024572553.1 cyclic di-GMP phosphodiesterase -
  NCL52_RS15935 (NCL52_15935) pncB 3089579..3091051 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  NCL52_RS15940 (NCL52_15940) pncA 3091067..3091618 (-) 552 WP_003243099.1 isochorismatase family cysteine hydrolase -

Sequence


Protein


Download         Length: 289 a.a.        Molecular weight: 33021.57 Da        Isoelectric Point: 4.6894

>NTDB_id=599254 NCL52_RS15910 WP_251107045.1 3086212..3087081(-) (comQ) [Bacillus subtilis strain N2-10]
MKEIVDENISNEDLKTKLISFIEEKKQFSFAELAYHHYIAFDGKDVTAIELLASGIELLILSADIFDDIEDKDNLQASWM
KIDPSIVINAATTLYTLSLQVISLVSNNPQLLSLTLQFSLQSLQGQHADLNVKISSESEYIEMIKLKSGSLVTLPSVLGV
YLATGEINETVEEYSLYLGIVEQIANDHHGLYYPDNNDMKTRHNLAFYYLKNKYNQSSIDLLNFYAQENNQINNMDELKK
RLQGSGVIQYLNVIKNIALENFKESFKKLRLDEQRKNKLLDQLLRGNIN

Nucleotide


Download         Length: 870 bp        

>NTDB_id=599254 NCL52_RS15910 WP_251107045.1 3086212..3087081(-) (comQ) [Bacillus subtilis strain N2-10]
ATGAAGGAGATTGTAGATGAAAATATTTCAAATGAAGACTTAAAAACAAAACTTATTTCTTTTATTGAAGAAAAAAAACA
ATTTTCATTTGCAGAATTAGCTTATCACCATTACATAGCATTTGACGGAAAAGATGTTACAGCAATTGAGTTGTTGGCTT
CTGGTATAGAACTTTTAATTTTATCTGCTGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAAATAGATCCTTCGATAGTGATTAACGCAGCTACTACACTTTATACATTAAGTTTGCAAGTGATAAGTTTAGTTTCAAA
CAATCCGCAACTTCTAAGTCTGACTTTACAATTTTCACTTCAATCTTTACAAGGGCAACATGCAGATTTAAATGTAAAAA
TCTCTTCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCAGGTTCTCTTGTAACATTGCCTAGTGTTCTTGGTGTA
TATTTGGCAACTGGAGAAATTAATGAAACAGTCGAGGAGTATTCACTTTATTTGGGTATAGTCGAGCAAATTGCGAATGA
TCACCATGGGCTATATTATCCTGACAATAATGACATGAAAACTAGACACAATCTTGCCTTCTACTATCTAAAAAATAAAT
ATAACCAATCATCGATTGACTTATTAAATTTTTATGCGCAAGAAAATAATCAGATAAATAACATGGATGAATTGAAAAAG
AGGTTACAAGGATCAGGTGTAATCCAATACCTGAATGTTATTAAAAATATAGCACTGGAAAATTTTAAAGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAGAATAAACTACTTGATCAATTATTAAGGGGGAATATAAATTGA

Domains


Predicted by InterProScan.

(45-197)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

42.361

99.654

0.422